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  • BICF
  • Issues

  • Open 76
  • Closed 273
  • All 349
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking
  • Insert vizapp code
    BICF/Astrocyte/chipseq_analysis#92 · created Aug 04, 2021 by Erand Smakaj   bug
    • 1
    updated Aug 05, 2021
  • Update nf-tower token
    BICF/Astrocyte/chipseq_analysis#91 · created Jul 25, 2021 by Venkat Malladi   2.0.0   critical
    • 1
    • 0
    updated Jul 25, 2021
  • Setting singularity to PWD doesnt work in the /work directory.
    BICF/Astrocyte/rnaseq#20 · created Jul 22, 2021 by Jeremy Mathews
    • 0
    updated Jul 22, 2021
  • non-biological reads needs renaming
    BICF/Astrocyte/sra_pipeline#30 · created Jul 19, 2021 by Venkat Malladi   Bug fixes error correction
    • 0
    updated Jul 19, 2021
  • Paired-end
    BICF/Astrocyte/sra_pipeline#29 · created Jul 19, 2021 by Venkat Malladi   Bug fixes
    • 0
    updated Jul 19, 2021
  • Upgrade to cellranger 5.0.0
    BICF/Astrocyte/cellranger_mkfastq#45 · created Nov 20, 2020 by Gervaise Henry   3.0.0   To Do
    • 0
    updated Nov 20, 2020
  • Add cellranger 5.0.0
    BICF/Astrocyte/cellranger_count#55 · created Nov 20, 2020 by Gervaise Henry   3.0.0   To Do support
    • 0
    updated Nov 20, 2020
  • 5GEX QC data not present in multiqc report
    BICF/Astrocyte/cellranger_count#54 · created Nov 04, 2020 by Gervaise Henry   3.0.0   To Do bug confirmed
    • 0
    updated Nov 04, 2020
  • Add ability to handle dual index
    BICF/Astrocyte/cellranger_mkfastq#44 · created Oct 30, 2020 by Gervaise Henry   Pending   To Do critical enhancement
    • 4
    updated Nov 03, 2020
  • Add output comments for untarBCL
    BICF/Astrocyte/cellranger_mkfastq#43 · created Oct 29, 2020 by Gervaise Henry   Pending   To Do enhancement
    • 1
    updated Nov 03, 2020
  • Strip spaces in design file
    BICF/Astrocyte/chipseq_analysis#90 · created Oct 20, 2020 by Venkat Malladi   2.0.0   bug
    • 0
    updated Dec 29, 2020
  • Ref 2020-A not compatible with cellrangers < 4.0.0
    BICF/Astrocyte/cellranger_count#53 · created Oct 16, 2020 by Gervaise Henry   3.0.0   To Do bug
    • 1
    updated Nov 20, 2020
  • Generate QC Plot
    BICF/Astrocyte/cellranger_count#52 · created Sep 18, 2020 by Jeremy Mathews
    • 0
    updated Sep 18, 2020
  • Diffbind is tsv not csv
    BICF/Astrocyte/chipseq_analysis#89 · created Sep 07, 2020 by Venkat Malladi   2.0.0   bug
    • 0
    updated Dec 29, 2020
  • Update to Astocyte 0.4.0   4 of 4 tasks completed
    BICF/Astrocyte/cellranger_mkfastq#42 · created Sep 07, 2020 by Venkat Malladi   To Do
    • 1
    • 0
    updated Sep 07, 2020
  • Add flag for SAM instead of FastQ
    BICF/Astrocyte/sra_pipeline#27 · created Aug 26, 2020 by Jonathan Gesell   New Feature To Do Updates
    • 0
    updated Aug 26, 2020
  • Fix issue downloading and spliting for single cell data
    BICF/Astrocyte/sra_pipeline#26 · created Aug 17, 2020 by Venkat Malladi   Bug fixes
    • 2
    updated Aug 21, 2020
  • create down-sampled test data
    BICF/Astrocyte/chipseq_analysis#88 · created Aug 07, 2020 by Spencer Barnes
    • 0
    updated Aug 07, 2020
  • Add back tags per process
    BICF/Astrocyte/methylation_analysis#5 · created Jul 11, 2020 by Venkat Malladi   1.0.0
    • 0
    updated Dec 29, 2020
  • Add a changelog
    BICF/Astrocyte/methylation_analysis#3 · created Jul 11, 2020 by Venkat Malladi   1.0.0
    • 0
    updated Dec 29, 2020
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