GRO_seq_TFSEE · bce3ebcb69acb00eed3f08418f5444f2ffb05080 · GCRB / TFSEE

bce3ebcb

18 commits behind the upstream repository.

Name	Last commit	Last update
..
GRO-seq_enhancers.bed
GRO_filtered_peaks.tsv
H3K27ac_filtered_peaks.bed
H3K27ac_filtered_peaks.tsv
H3K4me1_filtered_peaks.bed
H3K4me1_filtered_peaks.tsv
Input_filtered_peaks.bed
Input_filtered_peaks.tsv
SSP_filtered_peaks_sum.tsv
SUNP_filtered_peaks.tsv
box_plot_cluster_1.png
box_plot_cluster_2.png
box_plot_cluster_3.png
box_plot_cluster_3_enhancers_rpkm.png
box_plot_cluster_3_tfs_fpkm.png
box_plot_cluster_4.png
box_plot_cluster_4_enhancers_rpkm.png
box_plot_cluster_4_tfs_fpkm.png
closest_genes.py
closest_genes.sh
cluster3_enriched_tfs.png
cluster4_enriched_tfs.png
cluster_3_enhancers.csv
cluster_3_tfs.csv
cluster_4_enhancers.csv
cluster_4_tfs.csv
clustering_tfs.csv
final_full_cluster_heatmap.csv
final_full_cluster_heatmap.png
final_full_cluster_heatmap_gro-seq.csv
final_full_cluster_heatmap_gro-seq.png
final_full_cluster_heatmap_gro_rna.csv
final_full_cluster_heatmap_gro_rna.png
final_full_cluster_heatmap_rna-seq.csv
final_full_cluster_heatmap_rna-seq.png
final_full_cluster_z_score-groseq.csv
final_full_cluster_z_score-rnaseq.csv
final_full_cluster_z_score.csv
final_full_cluster_z_score_gro_rna.csv
find_the_clusters.py
gencode.v19.annotation_protein_coding_ids.txt
h3k27ac_list.csv
h3k4me1_list.csv
input_list.csv
k_means_clustering.png
k_means_clustering_pca.png
matrix_analysis.py
mem_awk_script.sh
rank_order.py
rna.tsv
rpkm.py
tfsee_processing.sh