diff --git a/Histone_TFSEE/cluster1_enriched_tfs.png b/Histone_TFSEE/cluster1_enriched_tfs.png deleted file mode 100644 index ef6c247344729c52152cd4e91ae5edba694aea69..0000000000000000000000000000000000000000 Binary files a/Histone_TFSEE/cluster1_enriched_tfs.png and /dev/null differ diff --git a/Histone_TFSEE/cluster2_enriched_tfs.png b/Histone_TFSEE/cluster2_enriched_tfs.png new file mode 100644 index 0000000000000000000000000000000000000000..1aded192feb99d33515b97068ee5669fa791abd2 Binary files /dev/null and b/Histone_TFSEE/cluster2_enriched_tfs.png differ diff --git a/Histone_TFSEE/cluster3_enriched_tfs.png b/Histone_TFSEE/cluster3_enriched_tfs.png index acc812e4c3471d743c4c25a5e71157be6a7b3634..31178fdfdfa3d33829fc47eb15f4684aca482e2c 100644 Binary files a/Histone_TFSEE/cluster3_enriched_tfs.png and b/Histone_TFSEE/cluster3_enriched_tfs.png differ diff --git a/Histone_TFSEE/rank_order.py b/Histone_TFSEE/rank_order.py index 2e032f4d0784cf873d9b786d517b2f036cb4b20e..fe840bcc0435335db9599b8dbeba79c62d2e6c43 100644 --- a/Histone_TFSEE/rank_order.py +++ b/Histone_TFSEE/rank_order.py @@ -8,30 +8,30 @@ import matplotlib.pyplot as plt tfsee = pd.read_csv('clustering_tfs.csv') -tfsee_cluster1 = tfsee[tfsee['cluster'] == 0] +tfsee_cluster2 = tfsee[tfsee['cluster'] == 1] -tfsee_cluster1['early'] = tfsee_cluster1[['ES_D0','ES_D2','ES_D5']].mean(axis=1) -tfsee_cluster1['late'] = tfsee_cluster1[['ES_D7','ES_D10']].mean(axis=1) -tfsee_cluster1['diff'] = tfsee_cluster1['early'] - tfsee_cluster1['late'] -tfsee_cluster1['rank'] = tfsee_cluster1['diff'].rank() +tfsee_cluster2['early'] = tfsee_cluster2[['ES_D0','ES_D2','ES_D5']].mean(axis=1) +tfsee_cluster2['late'] = tfsee_cluster2[['ES_D7','ES_D10']].mean(axis=1) +tfsee_cluster2['diff'] = tfsee_cluster2['early'] - tfsee_cluster2['late'] +tfsee_cluster2['rank'] = tfsee_cluster2['diff'].rank() -x = list(tfsee_cluster1['rank']) +x = list(tfsee_cluster2['rank']) -z = np.polyfit(tfsee_cluster1['rank'], tfsee_cluster1['diff'], 3) +z = np.polyfit(tfsee_cluster2['rank'], tfsee_cluster2['diff'], 3) f = np.poly1d(z) -x_new = np.linspace(1, 24, num=len(x)*10) +x_new = np.linspace(1, 19, num=len(x)*10) -plt.figure(figsize=(25,20))316A45 +plt.figure(figsize=(25,20)) plt.plot(x_new, f(x_new), color = 'k', linewidth=4.0) -plt.scatter(x=tfsee_cluster1['rank'], y=tfsee_cluster1['diff'], color='#316A45', s=600) +plt.scatter(x=tfsee_cluster2['rank'], y=tfsee_cluster2['diff'], color='#316A45', s=600) plt.ylim([-1.5,4.5]) -plt.xlim([0,25]) +plt.xlim([0,20]) plt.suptitle('Early Enriched TFS', fontsize=8, fontweight='bold') plt.xlabel('Rank Order',fontsize=8, fontweight='bold') plt.ylabel('delta z',fontsize=8, fontweight='bold') -plt.savefig('cluster1_enriched_tfs.png') +plt.savefig('cluster2_enriched_tfs.png') plt.clf() @@ -48,14 +48,14 @@ x = list(tfsee_cluster3['rank']) z = np.polyfit(tfsee_cluster3['rank'], tfsee_cluster3['diff'], 3) f = np.poly1d(z) -x_new = np.linspace(1, 17, num=len(x)*10) +x_new = np.linspace(1, 24, num=len(x)*10) plt.figure(figsize=(25,20)) plt.plot(x_new, f(x_new), color = 'k', linewidth=4.0) plt.scatter(x=tfsee_cluster3['rank'], y=tfsee_cluster3['diff'], color='#3999CA', s=600) plt.ylim([-1.5,4.5]) -plt.xlim([0,20]) +plt.xlim([0,25]) plt.suptitle('Late Enriched TFS', fontsize=8, fontweight='bold') plt.xlabel('Rank Order',fontsize=8, fontweight='bold') plt.ylabel('delta z',fontsize=8, fontweight='bold')