diff --git a/intervene_test/GRO-seq_enhancers.bed b/intervene_test/GRO-seq_enhancers.bed
index a487b94d619dc10b7303ef90aaced5b22bb4543c..ece0f50e0cc4b24c6421a77fcc8ea46eb9126a9e 100644
--- a/intervene_test/GRO-seq_enhancers.bed
+++ b/intervene_test/GRO-seq_enhancers.bed
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+chrX	78452449	78456999	SSP_1053368
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+chrX	82962949	82963149	SUNP_1467489
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+chrX	88735549	88737449	SSP_1060379
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+chrX	91353599	91353749	SUNP_1472052
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+chrX	92934699	92935049	SUNP_1472925
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+chrX	102676249	102676699	SUNP_1477587
+chrX	102678549	102679449	SUNP_1477588
+chrX	102681799	102681949	SUNP_1477590
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+chrX	103012549	103021349	SSP_1068959
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+chrX	108297299	108301199	SSP_1071071
+chrX	108297299	108301199	SSP_1071075
+chrX	108297299	108301199	SSP_1071074
+chrX	108297299	108302049	SSP_1071072
+chrX	110680199	110680649	SSP_1072074
+chrX	112199649	112200949	SSP_1073195
+chrX	112200699	112200949	SSP_1073199
+chrX	112200699	112200949	SSP_1073201
+chrX	113282599	113285049	SSP_1073500
+chrX	113282599	113285049	SSP_1073505
+chrX	113282599	113285049	SSP_1073503
+chrX	113283599	113283849	SSP_1073501
+chrX	113283599	113284699	SSP_1073502
+chrX	113283599	113284699	SSP_1073504
+chrX	113283599	113284749	SSP_1073506
+chrX	113293749	113295449	SSP_1073517
+chrX	113296049	113296449	SSP_1073520
+chrX	113296249	113298949	SSP_1073521
+chrX	113296249	113298949	SSP_1073522
+chrX	113703599	113703799	SSP_1073921
+chrX	113829699	113829849	SUNP_1483747
+chrX	113835749	113835849	SUNP_1483749
+chrX	114974249	114974399	SUNP_1484448
+chrX	114977249	114977699	SUNP_1484450
+chrX	114986349	114986499	SUNP_1484459
+chrX	114989349	114989499	SUNP_1484460
+chrX	114992399	114992549	SUNP_1484463
+chrX	114995349	114995499	SUNP_1484467
+chrX	114998299	114998449	SUNP_1484470
+chrX	115001299	115001449	SUNP_1484474
+chrX	115558649	115558999	SSP_1074966
+chrX	115558799	115558999	SSP_1074967
+chrX	116021099	116021349	SSP_1075282
+chrX	116420699	116420899	SSP_1075612
+chrX	116420699	116421149	SSP_1075613
+chrX	116420749	116420899	SSP_1075615
+chrX	120408999	120411999	SSP_1078438
+chrX	120409899	120411099	SSP_1078442
+chrX	120410749	120411099	SSP_1078444
+chrX	121102449	121111249	SSP_1079615
+chrX	121102449	121111249	SSP_1079618
+chrX	121102449	121111249	SSP_1079616
+chrX	121102449	121111249	SSP_1079612
+chrX	121102449	121111249	SSP_1079613
+chrX	121102449	121111249	SSP_1079614
+chrX	121102449	121111249	SSP_1079617
+chrX	121102449	121116299	SSP_1079619
+chrX	121104049	121107399	SSP_1079623
+chrX	121105299	121107799	SSP_1079624
+chrX	121384549	121384999	SSP_1079925
+chrX	121908149	121908649	SSP_1080364
+chrX	121908299	121908449	SSP_1080365
+chrX	122184549	122186949	SSP_1080548
+chrX	122184549	122186949	SSP_1080551
+chrX	122184549	122186949	SSP_1080554
+chrX	122184699	122186749	SSP_1080549
+chrX	122184699	122187099	SSP_1080550
+chrX	122184999	122185949	SSP_1080552
+chrX	122185599	122185899	SSP_1080555
+chrX	122647749	122652549	SSP_1080701
+chrX	122648199	122649149	SSP_1080699
+chrX	122648199	122649149	SSP_1080698
+chrX	122648199	122649149	SSP_1080700
+chrX	124517949	124518999	SSP_1081390
+chrX	124517949	124518999	SSP_1081389
+chrX	124521049	124521199	SUNP_1489280
+chrX	124521599	124521799	SSP_1081391
+chrX	124522849	124525399	SSP_1081394
+chrX	124522849	124525399	SSP_1081393
+chrX	124525849	124526899	SSP_1081396
+chrX	124526599	124526899	SSP_1081398
+chrX	124533599	124533899	SSP_1081399
+chrX	124533599	124533899	SSP_1081400
+chrX	125604849	125607999	SSP_1082402
+chrX	125604849	125609349	SSP_1082403
+chrX	125713599	125715699	SSP_1082511
+chrX	126012599	126012849	SSP_1082658
+chrX	126012599	126012949	SSP_1082659
+chrX	126480949	126481099	SSP_1083143
+chrX	127853599	127859899	SSP_1084227
+chrX	127858799	127866799	SSP_1084228
+chrX	129111099	129111449	SSP_1085020
+chrX	131714149	131714349	SSP_1086363
+chrX	132423749	132425449	SSP_1086692
+chrX	132423749	132427849	SSP_1086693
+chrX	132425349	132427999	SSP_1086694
+chrX	132425699	132426099	SUNP_1493438
+chrX	132426849	132426949	SUNP_1493439
+chrX	132427449	132427599	SUNP_1493440
+chrX	132427799	132427999	SSP_1086695
+chrX	132428449	132428649	SUNP_1493441
+chrX	132428599	132430399	SSP_1086696
+chrX	132428599	132430399	SSP_1086698
+chrX	132428599	132431049	SSP_1086699
+chrX	132428899	132429599	SSP_1086697
+chrX	132429699	132429799	SUNP_1493442
+chrX	132431499	132431649	SUNP_1493443
+chrX	136506899	136511949	SSP_1088697
+chrX	136512849	136513099	SSP_1088705
+chrX	137324299	137327349	SSP_1089876
+chrX	137325199	137327349	SSP_1089879
+chrX	137334449	137334649	SSP_1089881
+chrX	140210299	140212399	SSP_1091622
+chrX	140210299	140212399	SSP_1091623
+chrX	140210299	140212399	SSP_1091625
+chrX	140211399	140212399	SSP_1091624
+chrX	140211399	140212399	SSP_1091626
+chrX	141216149	141216349	SSP_1092356
+chrX	142753599	142753949	SSP_1093362
+chrX	142753649	142754399	SSP_1093364
+chrX	143856749	143858249	SSP_1093957
+chrX	143856749	143858249	SSP_1093956
+chrX	145227149	145227399	SSP_1094881
+chrX	150872299	150872499	SUNP_1502526
+chrX	151380699	151380899	SUNP_1502726
+chrY	3003699	3005949	SSP_1102019
+chrY	3003699	3005949	SSP_1102021
+chrY	3003699	3005949	SSP_1102020
+chrY	3004799	3005749	SSP_1102024
+chrY	3004799	3005749	SSP_1102022
+chrY	3004799	3005749	SSP_1102023
+chrY	3004999	3005299	SSP_1102025
+chrY	4212349	4212999	SUNP_1506424
+chrY	4212799	4212949	SUNP_1506425
+chrY	4391849	4393749	SSP_1102974
+chrY	4391849	4393749	SSP_1102973
+chrY	4392249	4392849	SSP_1102975
+chrY	5190449	5190599	SUNP_1506907
+chrY	5193949	5194099	SUNP_1506909
+chrY	5505949	5506249	SUNP_1507119
+chrY	5844699	5850099	SSP_1103548
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+chrY	5844899	5846299	SSP_1103542
+chrY	5844899	5846299	SSP_1103543
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+chrY	5844899	5846299	SSP_1103539
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+chrY	5846149	5847799	SSP_1103547
+chrY	5846149	5847799	SSP_1103546
+chrY	6092299	6093499	SSP_1103778
+chrY	8979449	8979649	SSP_1105254
+chrY	9928949	9933499	SSP_1105612
+chrY	9928949	9933499	SSP_1105614
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+chrY	9930449	9931449	SSP_1105628
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+chrY	10032899	10036949	SSP_1105846
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+chrY	16292499	16292949	SSP_1108171
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+chrY	17920699	17921049	SSP_1109167
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+chrY	17994599	17994999	SSP_1109215
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+chrY	25207399	25207999	SSP_1113494
+chrY	25207399	25207999	SSP_1113495
+chrY	26100499	26100649	SSP_1113951
+chrY	26100499	26100999	SSP_1113952
+chrY	26841099	26841749	SSP_1114514
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+chrY	27120699	27121349	SSP_1114600
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+chrY	59015649	59022499	SSP_1115750
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diff --git a/intervene_test/Histone_barplot.png b/intervene_test/Histone_barplot.png
index 922372a1b974abe446db2db6ad66b7e7740e6c9c..93f2b82fd53034ff920b63c6453ccffc0d901cb2 100644
Binary files a/intervene_test/Histone_barplot.png and b/intervene_test/Histone_barplot.png differ
diff --git a/intervene_test/Intervene_results/Intervene_Shiny_App_genomic_UpSet_module_import.txt b/intervene_test/Intervene_results/Intervene_Shiny_App_genomic_UpSet_module_import.txt
index b35ffed7cae5a2a929290243edba20ce2cd5c3b0..6e8e1f3d659597e6d2500f5707b4f4aa998699a0 100644
--- a/intervene_test/Intervene_results/Intervene_Shiny_App_genomic_UpSet_module_import.txt
+++ b/intervene_test/Intervene_results/Intervene_Shiny_App_genomic_UpSet_module_import.txt
@@ -1,3 +1,3 @@
 You can go to Intervene Shiny App https://asntech.shinyapps.io/Intervene-app/ and copy/paste the following intersection data to get more interactive figures.
 
-H3K27ac_enhancers=12510,H3K27ac_enhancers&H3K4me1_enhancers=55566,H3K4me1_enhancers=153327,GRO-seq_enhancers&H3K27ac_enhancers&H3K4me1_enhancers=610,GRO-seq_enhancers&H3K27ac_enhancers=256,GRO-seq_enhancers=3765,GRO-seq_enhancers&H3K4me1_enhancers=358
\ No newline at end of file
+H3K27ac_enhancers=12510,H3K27ac_enhancers&H3K4me1_enhancers=55566,H3K4me1_enhancers=153327,GRO-seq_enhancers&H3K27ac_enhancers&H3K4me1_enhancers=609,GRO-seq_enhancers&H3K27ac_enhancers=254,GRO-seq_enhancers=3754,GRO-seq_enhancers&H3K4me1_enhancers=357
\ No newline at end of file
diff --git a/intervene_test/Intervene_results/intervene_genomic_UpSet_plot.R b/intervene_test/Intervene_results/intervene_genomic_UpSet_plot.R
index 25c0f6a1493a28a2dd98843f2f4c866de94aab55..bc292195029743e87273305d230b0069643dc306 100755
--- a/intervene_test/Intervene_results/intervene_genomic_UpSet_plot.R
+++ b/intervene_test/Intervene_results/intervene_genomic_UpSet_plot.R
@@ -2,6 +2,6 @@
 if (suppressMessages(!require("UpSetR"))) suppressMessages(install.packages("UpSetR", repos="http://cran.us.r-project.org"))
 library("UpSetR")
 pdf("/Users/venkatmalladi/Projects/PITTED/intervene_test/Intervene_results/intervene_genomic_UpSet_plot.pdf", width=10, height=8, onefile=FALSE)
-expressionInput <- c('H3K27ac_enhancers'=12510,'H3K27ac_enhancers&H3K4me1_enhancers'=55566,'H3K4me1_enhancers'=153327,'GRO-seq_enhancers&H3K27ac_enhancers&H3K4me1_enhancers'=610,'GRO-seq_enhancers&H3K27ac_enhancers'=256,'GRO-seq_enhancers'=3765,'GRO-seq_enhancers&H3K4me1_enhancers'=358)
+expressionInput <- c('H3K27ac_enhancers'=12510,'H3K27ac_enhancers&H3K4me1_enhancers'=55566,'H3K4me1_enhancers'=153327,'GRO-seq_enhancers&H3K27ac_enhancers&H3K4me1_enhancers'=609,'GRO-seq_enhancers&H3K27ac_enhancers'=254,'GRO-seq_enhancers'=3754,'GRO-seq_enhancers&H3K4me1_enhancers'=357)
 upset(fromExpression(expressionInput), nsets=3, nintersects=30, show.numbers="yes", main.bar.color="#108DCC", sets.bar.color="#E62128", empty.intersections=NULL, order.by = "degree", number.angles = 0, mainbar.y.label ="No. of Intersections", sets.x.label ="No. of Unique Enhancers")
 invisible(dev.off())
diff --git a/intervene_test/Intervene_results/intervene_genomic_UpSet_plot.pdf b/intervene_test/Intervene_results/intervene_genomic_UpSet_plot.pdf
index 7703ab19db1e31dff555f43dda05c2c21d946928..78bc458548e12c2133c7dc24da4b8cf162425bbf 100644
Binary files a/intervene_test/Intervene_results/intervene_genomic_UpSet_plot.pdf and b/intervene_test/Intervene_results/intervene_genomic_UpSet_plot.pdf differ
diff --git a/intervene_test/intervene_figure.sh b/intervene_test/intervene_figure.sh
index e7890662e3e0f38ca37ace6756df069acc11fc10..7cf1829728b0c7106a51064ea1bbd0ff218b38d5 100644
--- a/intervene_test/intervene_figure.sh
+++ b/intervene_test/intervene_figure.sh
@@ -5,9 +5,9 @@ cp ../H3K4me1_filtered_peaks.bed H3K4me1_enhancers.bed
 cp ../H3K27ac_filtered_peaks.bed H3K27ac_enhancers.bed
 cp  ../SUNP_filtered_peaks.bed .
 cp  ../SSP_filtered_peaks_merged.bed .
-cut -f1,2,3  SUNP_filtered_peaks.bed > t
-cut -f1,2,3 SSP_filtered_peaks_merged.bed >> t
-sort-bed t > GRO-seq_enhancers.bed
+cut -f1,2,3,4  ../SUNP_filtered_peaks.bed > t
+cut -f1,2,3,4 ../SSP_filtered_peaks_merged.bed >> t
+sort-bed t | uniq > GRO-seq_enhancers.bed
 
 intervene upset -i *enhancers.bed --filename --order degree  --sxlabel "No. of Unique Enhancers" --dpi 1200  --figsize 10 8 --mbcolor "#108DCC"  --sbcolor "#E62128"
 
diff --git a/intervene_test/update_barplot.py b/intervene_test/update_barplot.py
index ccc7674b5064da76397c26e582345305307a77b3..c9c8cc6748d9bd09b9abf6d030095edff709899e 100644
--- a/intervene_test/update_barplot.py
+++ b/intervene_test/update_barplot.py
@@ -9,7 +9,7 @@ pts = np.array([
     179, 49, 189, 55720, 907, 12592, 153356])
 
 df = pd.DataFrame([
-    610, 256, 358, 55566, 3765, 12510, 153327])
+    609, 254, 357, 55566, 3754, 12510, 153327])
 
 ind = np.arange(N)  # the x locations for the groups
 width = 0.35       # the width of the bars