Commit 88ceeec0 authored by Venkat Malladi's avatar Venkat Malladi

Restructuring of RIP-seq analysis.

parent f3cacb0d
PARP-1 interacting snoRNA and DDX21
=================================
## External Repositories used in analysis:
## External Data used in analysis:
##Requirements:
- bedtools v2.25.0
- UCSC tools
- bedops v2.2.14
## Analysis of RIP-seq data
- RIP-seq.Rmd: Analysis of RIP-seq data
- figures: Figures related to RIP-seq binding
- tables: Tables of RIP-seq binding
## Analysis of RNA-seq
## General Analysis
- Summary_RIP-seq.xlsx: Summary of RIP-seq sequencing data bound RNA types
- Summary_RNA-seq.xlsx: Summary of RNA-seq for DDX21 perturbations
- Figures.pptx: Powerpoint of Figures
This diff is collapsed.
......@@ -63,7 +63,7 @@ chr5 138611868 138612009 + ENST00000516404.1 ENSG00000252213.1 0 227.62094058611
chr5 138614469 138614667 + ENST00000364089.1 ENSG00000200959.1 11.3876814530244 486.28110034307 SNORA74A-201 SNORA74A
chr5 172447730 172447931 + ENST00000391100.1 ENSG00000212402.1 179.483456931251 824.125889844779 SNORA74B-201 SNORA74B
chr5 40790178 40790306 - ENST00000391265.1 ENSG00000212567.1 0 48.530069489883 SNORA57.2-201 SNORA57
chr5 40832757 40832837 - ENST00000390994.1 ENSG00000212296.1 28.1845115962355 271.768389143345 SNORD72-201 SNORD72
chr5 40832757 40832837 - ENST00000390994.1 ENSG00000212296.1 28.1845115962354 271.768389143345 SNORD72-201 SNORD72
chr5 76376258 76376396 - ENST00000458862.1 ENSG00000238961.1 32.677694604331 97.5290285400547 SNORA47-201 SNORA47
chr5 82360022 82360156 - ENST00000459004.1 ENSG00000238835.1 67.306296349219 231.785406518844 SCARNA18-201 SCARNA18
chr5 137896731 137896799 - ENST00000384262.1 ENSG00000206989.1 0 30.4502396799266 SNORD63-201 SNORD63
......@@ -84,7 +84,7 @@ chr7 56128162 56128295 + ENST00000384439.1 ENSG00000207168.1 0 23.3528153936279
chr7 65220512 65220646 + ENST00000383907.1 ENSG00000206634.1 0 247.237766953434 SNORA22-201 SNORA22
chr7 107243807 107243952 + ENST00000459477.1 ENSG00000238832.1 0 21.4201686024311 snoU109.4-201 snoU109
chr7 129959118 129959222 + ENST00000459210.1 ENSG00000238336.1 0 19.9097720984135 snoU13.25-201 snoU13
chr7 45024976 45025109 - ENST00000384215.1 ENSG00000232956.4 67.8123587277846 194.606794946899 SNHG15-201 SNHG15
chr7 45024976 45025109 - ENST00000384215.1 ENSG00000232956.4 67.8123587277845 194.606794946899 SNHG15-201 SNHG15
chr7 45143947 45144081 - ENST00000384111.1 ENSG00000206838.1 0 200.880685649665 SNORA5A-201 SNORA5A
chr7 45144504 45144641 - ENST00000364902.1 ENSG00000201772.1 0 22.6709813675366 SNORA5C-201 SNORA5C
chr8 99054313 99054445 - ENST00000384339.1 ENSG00000207067.1 0 31.3729742156819 SNORA72-201 SNORA72
......@@ -103,7 +103,7 @@ chr10 120820494 120820623 - ENST00000410656.1 ENSG00000222588.1 0 8.025644566802
chr11 3943796 3943933 + ENST00000384249.1 ENSG00000206976.1 0 15.1139875783577 SNORA7.4-201 SNORA7
chr11 8705773 8705903 + ENST00000364113.1 ENSG00000200983.1 17.3443148284526 119.458632590481 SNORA3-201 SNORA3
chr11 8706985 8707116 + ENST00000391305.1 ENSG00000212607.1 34.4238309572341 252.899700547787 SNORA45-201 SNORA45
chr11 9450319 9450501 + ENST00000365128.1 ENSG00000201998.1 495.551852241503 1308.35645218146 SNORA23-201 SNORA23
chr11 9450319 9450501 + ENST00000365128.1 ENSG00000201998.1 495.551852241502 1308.35645218146 SNORA23-201 SNORA23
chr11 62432893 62433042 + ENST00000383870.1 ENSG00000206597.1 0 118.122406275151 SNORA57-201 SNORA57
chr11 75115464 75115610 + ENST00000384714.1 ENSG00000207445.1 0 49.6380619439899 SNORD15B-201 SNORD15B
chr11 93454707 93454787 + ENST00000364329.1 ENSG00000254911.2 0 103.53081491175 SCARNA9-202 SCARNA9
......@@ -253,7 +253,7 @@ chr5 178311715 178311880 + ENST00000383897.1 ENSG00000206624.1 0 31.372974215681
chr5 125888993 125889094 - ENST00000363477.1 ENSG00000200347.1 0 10.2505757338367 RNU6-963P-201 RNU6-963P
chr6 76353799 76353893 + ENST00000516689.1 ENSG00000252498.1 0 11.0139164799734 RNU6-1016P-201 RNU6-1016P
chr7 138561104 138561211 - ENST00000362776.1 ENSG00000199646.1 0 9.67577709455611 RNU6-1272P-201 RNU6-1272P
chr8 42928616 42928761 + ENST00000363861.1 ENSG00000200731.1 15.5500753634403 35.7002810040518 RNU1-124P-201 RNU1-124P
chr8 42928616 42928761 + ENST00000363861.1 ENSG00000200731.1 15.5500753634402 35.7002810040518 RNU1-124P-201 RNU1-124P
chr8 99204432 99204541 - ENST00000516749.1 ENSG00000252558.1 0 18.9964798003212 RNU6-914P-201 RNU6-914P
chr9 33868537 33868663 + ENST00000515939.1 ENSG00000251748.1 0 8.21673134220241 RNU4ATAC11P-201 RNU4ATAC11P
chr9 134002376 134002478 + ENST00000516813.1 ENSG00000252622.1 0 20.3001597866177 RNU6-881P-201 RNU6-881P
......
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seqnames starts ends strand tx_id gene_id PI PARP1 tx_name gene_name
chr1 28833877 28834083 + ENST00000364938.1 ENSG00000242125.2 551.374598303515 5339.6736258542 SNHG3-201 SNHG3
chr1 28835070 28835274 + ENST00000363217.1 ENSG00000200087.1 405.75077607951 4285.77606509813 SNORA73B-201 SNORA73B
chr1 28835070 28835274 + ENST00000363217.1 ENSG00000200087.1 405.750776079509 4285.77606509813 SNORA73B-201 SNORA73B
chr1 52877113 52877194 + ENST00000458879.1 ENSG00000239063.1 5.67717135255281 43.8263600366656 snoU13.369-201 snoU13
chr1 93303574 93303627 + ENST00000515986.1 ENSG00000251795.1 0 9.56855839075449 SNORA66.1-201 SNORA66
chr1 113195209 113195310 + ENST00000459345.1 ENSG00000238975.1 0 10.0422494001978 snoU13.325-201 snoU13
......@@ -13,7 +13,7 @@ chr1 31408534 31408620 - ENST00000363284.1 ENSG00000200154.1 21.3884130026408 47
chr1 31421963 31422049 - ENST00000365237.1 ENSG00000202107.1 0 5.89690226406963 SNORD103B-201 SNORD103B
chr1 31441010 31441083 - ENST00000363311.1 ENSG00000200181.1 6.29932711721613 20.8411066319173 SNORD85-201 SNORD85
chr1 54236690 54236826 - ENST00000364133.1 ENSG00000201003.1 0 7.45784698102924 SNORA58.1-201 SNORA58
chr1 155385348 155385453 - ENST00000458873.1 ENSG00000238805.1 8.75906437251005 43.4685938322847 snoU13.251-201 snoU13
chr1 155385348 155385453 - ENST00000458873.1 ENSG00000238805.1 8.75906437251004 43.4685938322847 snoU13.251-201 snoU13
chr1 155895748 155895877 - ENST00000516999.1 ENSG00000252808.1 17.8236775022007 55.0377544646499 SCARNA4-201 SCARNA4
chr1 173833283 173833360 - ENST00000363840.1 ENSG00000234741.3 5.97208934489321 98.7922587097379 GAS5-202 GAS5
chr1 173833506 173833583 - ENST00000365524.1 ENSG00000234741.3 41.8046254142525 92.2061081290887 GAS5-206 GAS5
......@@ -27,27 +27,27 @@ chr2 234184372 234184648 + ENST00000516201.1 ENSG00000252010.1 26.6580220032914
chr2 234197321 234197586 + ENST00000515982.1 ENSG00000251791.1 38.1762994349023 88.0307371949413 SCARNA6-201 SCARNA6
chr2 10586839 10586975 - ENST00000383906.1 ENSG00000206633.1 37.1938211406217 220.006485940362 SNORA80B-201 SNORA80B
chr2 101889397 101889511 - ENST00000390981.1 ENSG00000212283.1 0 17.7941612178943 SNORD89-201 SNORD89
chr2 232320510 232320647 - ENST00000384158.1 ENSG00000206885.1 0 51.8238709922616 SNORA75-201 SNORA75
chr2 232320510 232320647 - ENST00000384158.1 ENSG00000206885.1 0 51.8238709922615 SNORA75-201 SNORA75
chr3 39452544 39452697 + ENST00000365493.1 ENSG00000202363.1 3.00556130429266 16.5729932911761 SNORA62-201 SNORA62
chr3 175457058 175457164 + ENST00000606657.1 ENSG00000271842.1 0 4.78427919537725 snoU13.470-201 snoU13
chr3 185160006 185160107 + ENST00000459417.1 ENSG00000239146.1 0 5.02112470009889 snoU13.413-201 snoU13
chr3 186504463 186504641 + ENST00000408493.2 ENSG00000221420.2 550.27099632356 2008.59092286821 SNORA81-201 SNORA81
chr3 186504463 186504641 + ENST00000408493.2 ENSG00000221420.2 550.270996323559 2008.59092286821 SNORA81-201 SNORA81
chr3 186505088 186505220 + ENST00000363450.1 ENSG00000200320.1 149.799907734405 587.813939322941 SNORA63-201 SNORA63
chr3 186505400 186505538 + ENST00000584302.1 ENSG00000263776.1 53.3160440065829 150.670125964562 SNORA4-201 SNORA4
chr3 41940602 41940745 - ENST00000390843.2 ENSG00000212145.2 9.64722124944288 24.8247214193701 U8.14-201 U8
chr3 41940602 41940745 - ENST00000390843.2 ENSG00000212145.2 9.64722124944288 24.82472141937 U8.14-201 U8
chr3 129116052 129116191 - ENST00000384360.1 ENSG00000207088.1 0 32.8359881466899 SNORA7B-201 SNORA7B
chr4 1976362 1976487 + ENST00000503991.1 ENSG00000249784.1 80.9337548019928 178.511025337916 SCARNA22-001 SCARNA22
chr4 57860240 57860336 + ENST00000459266.1 ENSG00000238579.1 0 31.6958496693743 snoU13.144-201 snoU13
chr4 119200344 119200475 + ENST00000384096.1 ENSG00000269893.2 17.5515602884266 178.077445470683 SNHG8-201 SNHG8
chr5 85916322 85916385 + ENST00000362392.1 ENSG00000199262.1 94.8898640355255 241.492187957137 MIR3607-201 MIR3607
chr5 111497181 111497314 + ENST00000458790.1 ENSG00000238363.1 10.372576230604 34.3173109202248 SNORA13-201 SNORA13
chr5 111497181 111497314 + ENST00000458790.1 ENSG00000238363.1 10.372576230604 34.3173109202247 SNORA13-201 SNORA13
chr5 138611868 138612009 + ENST00000516404.1 ENSG00000252213.1 32.6135375572183 115.09414915404 SNORA74.4-201 SNORA74
chr5 138614469 138614667 + ENST00000364089.1 ENSG00000200959.1 102.189084345951 801.680884566799 SNORA74A-201 SNORA74A
chr5 172447730 172447931 + ENST00000391100.1 ENSG00000212402.1 70.9222749565179 219.505585769995 SNORA74B-201 SNORA74B
chr5 76376258 76376396 - ENST00000458862.1 ENSG00000238961.1 0 77.1725035428243 SNORA47-201 SNORA47
chr5 82360022 82360156 - ENST00000459004.1 ENSG00000238835.1 13.726891927068 64.3378441049985 SCARNA18-201 SCARNA18
chr5 137894658 137894728 - ENST00000411005.1 ENSG00000222937.1 0 28.9790625548565 SNORD63.1-201 SNORD63
chr5 137896731 137896799 - ENST00000384262.1 ENSG00000206989.1 33.8125646732925 82.0363167913216 SNORD63-201 SNORD63
chr5 137896731 137896799 - ENST00000384262.1 ENSG00000206989.1 33.8125646732924 82.0363167913216 SNORD63-201 SNORD63
chr6 31590855 31590987 + ENST00000363946.1 ENSG00000200816.1 31.3534690606894 161.360689225905 SNORA38-201 SNORA38
chr6 31804852 31804919 + ENST00000364884.1 ENSG00000201754.1 109.815135416544 227.074743899995 SNORD52-201 SNORD52
chr6 111284668 111284772 + ENST00000458794.1 ENSG00000238775.1 30.9515015086292 73.1442684677867 snoU13.238-201 snoU13
......@@ -78,7 +78,7 @@ chr9 136217310 136217383 + ENST00000362874.1 ENSG00000199744.1 31.4966355860806
chr9 95054742 95054875 - ENST00000459229.1 ENSG00000239183.1 41.490304922416 221.156003708115 SNORA84-201 SNORA84
chr9 119943344 119943479 - ENST00000384538.1 ENSG00000207268.1 0 3.75654514599991 SNORA70C-201 SNORA70C
chr9 139620556 139620686 - ENST00000362567.2 ENSG00000233016.2 166.253779532066 499.331539406757 SNHG7-201 SNHG7
chr9 139621199 139621331 - ENST00000391185.1 ENSG00000233016.2 17.4185939226052 69.1545810968166 SNHG7-202 SNHG7
chr9 139621199 139621331 - ENST00000391185.1 ENSG00000233016.2 17.4185939226052 69.1545810968165 SNHG7-202 SNHG7
chr10 70514928 70514995 + ENST00000408255.1 ENSG00000221182.1 0 15.1383162599996 SNORD98-201 SNORD98
chr10 101996912 101997059 - ENST00000391162.1 ENSG00000212464.1 118.873016484065 527.832925106314 SNORA12-201 SNORA12
chr11 8705773 8705903 + ENST00000364113.1 ENSG00000200983.1 21.2238867487743 97.5256912903823 SNORA3-201 SNORA3
......@@ -100,7 +100,7 @@ chr12 132515768 132515904 + ENST00000386157.1 ENSG00000208892.1 20.2875388039755
chr12 6690639 6690775 - ENST00000516089.1 ENSG00000251898.1 27.050051738634 67.1206228292631 SCARNA11-201 SCARNA11
chr12 7076499 7076769 - ENST00000459155.1 ENSG00000238795.1 86.8607216940579 214.123073321995 SCARNA12-201 SCARNA12
chr12 40213551 40213685 - ENST00000362701.1 ENSG00000199571.1 0 7.56915812999982 SNORA22.1-201 SNORA22
chr12 49048164 49048301 - ENST00000408564.2 ENSG00000221491.2 20.1394545791289 96.2443318427715 SNORA34-201 SNORA34
chr12 49048164 49048301 - ENST00000408564.2 ENSG00000221491.2 20.1394545791289 96.2443318427714 SNORA34-201 SNORA34
chr12 49061239 49061376 - ENST00000384583.1 ENSG00000207313.1 0 3.70170507087583 SNORA2B-201 SNORA2B
chr12 57038810 57038885 - ENST00000384304.1 ENSG00000207031.1 128.758246275898 304.280156825993 SNORD59A-201 SNORD59A
chr12 110934156 110934226 - ENST00000365465.1 ENSG00000202335.1 0 7.24476563871411 SNORD50.2-201 SNORD50
......@@ -115,14 +115,14 @@ chr14 21865450 21865560 - ENST00000363915.1 ENSG00000200785.1 0 18.4412216258178
chr14 36256064 36256168 - ENST00000458749.1 ENSG00000238718.1 4.42164307266132 14.6288536935573 snoU13.210-201 snoU13
chr15 56247898 56248002 - ENST00000459436.1 ENSG00000238513.1 8.84328614532264 24.3814228225956 snoU13.107-201 snoU13
chr15 58892330 58892434 - ENST00000458913.1 ENSG00000239100.1 0 14.6288536935573 snoU13.391-201 snoU13
chr15 66639544 66639680 - ENST00000516903.1 ENSG00000252712.1 3.38125646732925 33.5603114146316 SCARNA14-201 SCARNA14
chr15 66639544 66639680 - ENST00000516903.1 ENSG00000252712.1 3.38125646732924 33.5603114146316 SCARNA14-201 SCARNA14
chr16 2015184 2015311 + ENST00000459373.1 ENSG00000255198.3 25.3461114716334 151.740760621886 SNHG9-201 SNHG9
chr16 30721857 30721986 + ENST00000384028.1 ENSG00000206755.1 14.2589420017605 98.2817044011605 SNORA30-201 SNORA30
chr16 2012334 2012467 - ENST00000384084.1 ENSG00000206811.1 34.5752541020133 72.4476563871412 SNORA10-201 SNORA10
chr16 2012334 2012467 - ENST00000384084.1 ENSG00000206811.1 34.5752541020133 72.4476563871411 SNORA10-201 SNORA10
chr16 2012973 2013107 - ENST00000384674.1 ENSG00000207405.1 439.260541666175 1759.82926522496 SNORA64-201 SNORA64
chr16 47154829 47154932 - ENST00000458876.1 ENSG00000238834.1 0 4.92362713310668 snoU13.262-201 snoU13
chr16 58582402 58582537 - ENST00000384762.1 ENSG00000207493.1 10.2189084345951 48.8350868979988 SNORA46-201 SNORA46
chr16 58593699 58593835 - ENST00000384225.2 ENSG00000206952.2 3.38125646732925 59.6627758482339 SNORA50-201 SNORA50
chr16 58593699 58593835 - ENST00000384225.2 ENSG00000206952.2 3.38125646732924 59.6627758482339 SNORA50-201 SNORA50
chr16 71732469 71732604 - ENST00000578836.1 ENSG00000263666.1 0 7.51309029199982 SNORA70D-001 SNORA70D
chr16 71792304 71792390 - ENST00000411292.1 ENSG00000223224.1 0 5.89690226406963 SNORD71-201 SNORD71
chr17 7478030 7478165 + ENST00000386847.1 ENSG00000209582.1 85.1575702882921 458.298507811989 SNORA48-201 SNORA48
......@@ -150,8 +150,8 @@ chr19 12817262 12817332 - ENST00000386967.1 ENSG00000209702.1 0 7.24476563871411
chr20 2634857 2634932 + ENST00000408189.1 ENSG00000221116.1 0 13.5235625255997 SNORD110-201 SNORD110
chr20 2635712 2635844 + ENST00000606420.1 ENSG00000271798.1 6.96743756904208 130.625319849542 SNORA51-201 SNORA51
chr20 2637269 2637340 + ENST00000413522.1 ENSG00000229686.1 6.47677295150391 28.5709067442247 SNORD56-001 SNORD56
chr20 37078012 37078146 + ENST00000362396.1 ENSG00000199266.1 3.431722981767 15.1383162599996 SNORA60-201 SNORA60
chr20 47896855 47896946 + ENST00000410433.1 ENSG00000222365.1 55.5863700563138 222.915865806588 SNORD12B-201 SNORD12B
chr20 37078012 37078146 + ENST00000362396.1 ENSG00000199266.1 3.43172298176699 15.1383162599996 SNORA60-201 SNORA60
chr20 47896855 47896946 + ENST00000410433.1 ENSG00000222365.1 55.5863700563137 222.915865806588 SNORD12B-201 SNORD12B
chr20 47897219 47897309 + ENST00000391002.1 ENSG00000212304.1 25.5472710864876 236.662344197994 SNORD12-201 SNORD12
chr20 2443607 2443683 - ENST00000515997.1 ENSG00000251806.1 18.152008403557 73.4009150238141 SNORD119-201 SNORD119
chr20 37053845 37053979 - ENST00000364546.1 ENSG00000235408.2 17.158614908835 71.9070022349983 SNORA71B-201 SNORA71B
......@@ -162,7 +162,7 @@ chr21 40717299 40717383 - ENST00000459446.1 ENSG00000238556.1 10.9488304656376 4
chr22 20113924 20114049 + ENST00000578179.1 ENSG00000264346.1 11.0364211093627 24.3424125460794 SNORA77.4-201 SNORA77
chr22 39715054 39715118 - ENST00000583861.1 ENSG00000263764.1 0 15.8479248346871 SNORD43-201 SNORD43
chrX 15734330 15734469 + ENST00000363750.1 ENSG00000200620.1 3.30827970904156 14.5937725096399 SNORA7.1-201 SNORA7
chrX 54840802 54840930 + ENST00000408789.1 ENSG00000221716.1 68.2591149342092 245.64283493765 SNORA11-201 SNORA11
chrX 54840802 54840930 + ENST00000408789.1 ENSG00000221716.1 68.2591149342091 245.64283493765 SNORA11-201 SNORA11
chrX 153628621 153628756 + ENST00000384436.1 ENSG00000207165.1 0 33.8089063139992 SNORA70-201 SNORA70
chrX 153996802 153996934 + ENST00000384221.1 ENSG00000206948.1 17.4185939226052 42.261132892499 SNORA36A-201 SNORA36A
chrX 154003272 154003401 + ENST00000383966.1 ENSG00000206693.1 7.12947100088027 19.6563408802321 SNORA56-201 SNORA56
......@@ -179,7 +179,7 @@ chr1 148604907 148605072 - ENST00000384476.1 ENSG00000207205.1 0 3.0735369376362
chr1 149224057 149224221 - ENST00000384010.1 ENSG00000206737.1 0 12.3691120660973 RNVU1-18-201 RNVU1-18
chr1 155328502 155328609 - ENST00000384405.1 ENSG00000207134.1 4.29767177155867 18.9582652228033 RNU6-106P-201 RNU6-106P
chr2 201763742 201763844 + ENST00000517107.1 ENSG00000252916.1 9.01668391287799 19.8875919494113 RNU6-762P-201 RNU6-762P
chr2 201944564 201944667 + ENST00000516339.1 ENSG00000252148.1 4.46457164618231 19.6945085324267 RNU6-1206P-201 RNU6-1206P
chr2 201944564 201944667 + ENST00000516339.1 ENSG00000252148.1 4.4645716461823 19.6945085324267 RNU6-1206P-201 RNU6-1206P
chr2 236945893 236945955 + ENST00000458845.1 ENSG00000238812.1 7.4169496702706 24.5387223246768 RNU7-127P-201 RNU7-127P
chr2 55241553 55241657 - ENST00000363216.1 ENSG00000200086.1 0 9.75256912903823 RNU6-433P-201 RNU6-433P
chr3 12556204 12556306 + ENST00000515965.1 ENSG00000251774.1 0 4.97189798735282 RNU6-377P-201 RNU6-377P
......@@ -202,7 +202,7 @@ chr8 129011376 129011540 + ENST00000384382.1 ENSG00000207110.1 2.80396877778523
chr8 81661795 81661928 - ENST00000391127.1 ENSG00000212429.1 0 7.62606909338328 RNU11-6P-201 RNU11-6P
chr9 33868537 33868663 + ENST00000515939.1 ENSG00000251748.1 7.29922031042504 72.4476563871412 RNU4ATAC11P-201 RNU4ATAC11P
chr10 35424370 35424430 + ENST00000517245.1 ENSG00000253054.1 15.3283626518926 33.8089063139992 RNU7-77P-201 RNU7-77P
chr10 88649325 88649490 + ENST00000363306.1 ENSG00000200176.1 2.78697502761683 9.22061081290888 RNU1-19P-201 RNU1-19P
chr10 88649325 88649490 + ENST00000363306.1 ENSG00000200176.1 2.78697502761683 9.22061081290887 RNU1-19P-201 RNU1-19P
chr10 1088232 1088295 - ENST00000459467.1 ENSG00000238924.1 7.29922031042504 24.1492187957137 RNU7-163P-201 RNU7-163P
chr10 27521183 27521245 - ENST00000516030.1 ENSG00000251839.1 0 16.3591482164512 RNU7-12P-201 RNU7-12P
chr10 73604491 73604551 - ENST00000459501.1 ENSG00000238446.1 0 16.9044531569996 RNU7-38P-201 RNU7-38P
......@@ -217,7 +217,7 @@ chr12 42792351 42792453 + ENST00000363016.1 ENSG00000199886.1 18.033367825756 39
chr12 57904846 57904918 + ENST00000517056.1 ENSG00000252865.1 6.38681777162191 14.0870442974997 RNU6-594P-201 RNU6-594P
chr12 15824640 15824744 - ENST00000363235.1 ENSG00000200105.1 0 4.87628456451912 RNU6-251P-201 RNU6-251P
chr12 56746170 56746234 - ENST00000516397.1 ENSG00000252206.1 0 7.92396241734356 RNU7-40P-201 RNU7-40P
chr12 110005779 110005920 - ENST00000363404.1 ENSG00000200274.1 3.26135375572183 39.5636137717012 RNU4-32P-201 RNU4-32P
chr12 110005779 110005920 - ENST00000363404.1 ENSG00000200274.1 3.26135375572182 39.5636137717012 RNU4-32P-201 RNU4-32P
chr13 22125442 22125549 - ENST00000384787.1 ENSG00000207518.1 4.29767177155867 23.6978315285041 RNU6-59P-201 RNU6-59P
chr14 35314505 35314566 - ENST00000515917.1 ENSG00000251726.1 15.077078018255 33.2546619481959 RNU7-41P-201 RNU7-41P
chr14 58759010 58759106 - ENST00000516973.1 ENSG00000252782.1 4.79011332871643 21.1305664462495 RNU6-341P-201 RNU6-341P
......
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