Restructuring of RIP-seq analysis.

README.md

+PARP-1 interacting snoRNA and DDX21
+=================================
+
+## External Repositories used in analysis:
+
+
+## External Data used in analysis:
+
+
+##Requirements:
+- bedtools v2.25.0
+- UCSC tools
+- bedops v2.2.14
+
+
+
+## Analysis of RIP-seq data
+- RIP-seq.Rmd: Analysis of RIP-seq data
+- figures: Figures related to RIP-seq binding
+- tables: Tables of RIP-seq binding
+
+## Analysis of RNA-seq
+
+
+## General Analysis
+- Summary_RIP-seq.xlsx: Summary of RIP-seq sequencing data bound RNA types
+- Summary_RNA-seq.xlsx: Summary of RNA-seq for DDX21 perturbations
+- Figures.pptx: Powerpoint of Figures

ac16-tnf-snRNA_RPKM_1_FC_2.tsv → tables/ac16-tnf-snRNA_RPKM_1_FC_2.tsv

@@ -63,7 +63,7 @@ chr5	138611868	138612009	+	ENST00000516404.1	ENSG00000252213.1	0	227.62094058611
 chr5	138614469	138614667	+	ENST00000364089.1	ENSG00000200959.1	11.3876814530244	486.28110034307	SNORA74A-201	SNORA74A
 chr5	172447730	172447931	+	ENST00000391100.1	ENSG00000212402.1	179.483456931251	824.125889844779	SNORA74B-201	SNORA74B
 chr5	40790178	40790306	-	ENST00000391265.1	ENSG00000212567.1	0	48.530069489883	SNORA57.2-201	SNORA57
-chr5	40832757	40832837	-	ENST00000390994.1	ENSG00000212296.1	28.1845115962355	271.768389143345	SNORD72-201	SNORD72
+chr5	40832757	40832837	-	ENST00000390994.1	ENSG00000212296.1	28.1845115962354	271.768389143345	SNORD72-201	SNORD72
 chr5	76376258	76376396	-	ENST00000458862.1	ENSG00000238961.1	32.677694604331	97.5290285400547	SNORA47-201	SNORA47
 chr5	82360022	82360156	-	ENST00000459004.1	ENSG00000238835.1	67.306296349219	231.785406518844	SCARNA18-201	SCARNA18
 chr5	137896731	137896799	-	ENST00000384262.1	ENSG00000206989.1	0	30.4502396799266	SNORD63-201	SNORD63
@@ -84,7 +84,7 @@ chr7	56128162	56128295	+	ENST00000384439.1	ENSG00000207168.1	0	23.3528153936279
 chr7	65220512	65220646	+	ENST00000383907.1	ENSG00000206634.1	0	247.237766953434	SNORA22-201	SNORA22
 chr7	107243807	107243952	+	ENST00000459477.1	ENSG00000238832.1	0	21.4201686024311	snoU109.4-201	snoU109
 chr7	129959118	129959222	+	ENST00000459210.1	ENSG00000238336.1	0	19.9097720984135	snoU13.25-201	snoU13
-chr7	45024976	45025109	-	ENST00000384215.1	ENSG00000232956.4	67.8123587277846	194.606794946899	SNHG15-201	SNHG15
+chr7	45024976	45025109	-	ENST00000384215.1	ENSG00000232956.4	67.8123587277845	194.606794946899	SNHG15-201	SNHG15
 chr7	45143947	45144081	-	ENST00000384111.1	ENSG00000206838.1	0	200.880685649665	SNORA5A-201	SNORA5A
 chr7	45144504	45144641	-	ENST00000364902.1	ENSG00000201772.1	0	22.6709813675366	SNORA5C-201	SNORA5C
 chr8	99054313	99054445	-	ENST00000384339.1	ENSG00000207067.1	0	31.3729742156819	SNORA72-201	SNORA72
@@ -103,7 +103,7 @@ chr10	120820494	120820623	-	ENST00000410656.1	ENSG00000222588.1	0	8.025644566802
 chr11	3943796	3943933	+	ENST00000384249.1	ENSG00000206976.1	0	15.1139875783577	SNORA7.4-201	SNORA7
 chr11	8705773	8705903	+	ENST00000364113.1	ENSG00000200983.1	17.3443148284526	119.458632590481	SNORA3-201	SNORA3
 chr11	8706985	8707116	+	ENST00000391305.1	ENSG00000212607.1	34.4238309572341	252.899700547787	SNORA45-201	SNORA45
-chr11	9450319	9450501	+	ENST00000365128.1	ENSG00000201998.1	495.551852241503	1308.35645218146	SNORA23-201	SNORA23
+chr11	9450319	9450501	+	ENST00000365128.1	ENSG00000201998.1	495.551852241502	1308.35645218146	SNORA23-201	SNORA23
 chr11	62432893	62433042	+	ENST00000383870.1	ENSG00000206597.1	0	118.122406275151	SNORA57-201	SNORA57
 chr11	75115464	75115610	+	ENST00000384714.1	ENSG00000207445.1	0	49.6380619439899	SNORD15B-201	SNORD15B
 chr11	93454707	93454787	+	ENST00000364329.1	ENSG00000254911.2	0	103.53081491175	SCARNA9-202	SCARNA9
@@ -253,7 +253,7 @@ chr5	178311715	178311880	+	ENST00000383897.1	ENSG00000206624.1	0	31.372974215681
 chr5	125888993	125889094	-	ENST00000363477.1	ENSG00000200347.1	0	10.2505757338367	RNU6-963P-201	RNU6-963P
 chr6	76353799	76353893	+	ENST00000516689.1	ENSG00000252498.1	0	11.0139164799734	RNU6-1016P-201	RNU6-1016P
 chr7	138561104	138561211	-	ENST00000362776.1	ENSG00000199646.1	0	9.67577709455611	RNU6-1272P-201	RNU6-1272P
-chr8	42928616	42928761	+	ENST00000363861.1	ENSG00000200731.1	15.5500753634403	35.7002810040518	RNU1-124P-201	RNU1-124P
+chr8	42928616	42928761	+	ENST00000363861.1	ENSG00000200731.1	15.5500753634402	35.7002810040518	RNU1-124P-201	RNU1-124P
 chr8	99204432	99204541	-	ENST00000516749.1	ENSG00000252558.1	0	18.9964798003212	RNU6-914P-201	RNU6-914P
 chr9	33868537	33868663	+	ENST00000515939.1	ENSG00000251748.1	0	8.21673134220241	RNU4ATAC11P-201	RNU4ATAC11P
 chr9	134002376	134002478	+	ENST00000516813.1	ENSG00000252622.1	0	20.3001597866177	RNU6-881P-201	RNU6-881P

mcf-7-e2-snRNA_RPKM_1_FC_2.tsv → tables/mcf-7-e2-snRNA_RPKM_1_FC_2.tsv

 seqnames	starts	ends	strand	tx_id	gene_id	PI	PARP1	tx_name	gene_name
 chr1	28833877	28834083	+	ENST00000364938.1	ENSG00000242125.2	551.374598303515	5339.6736258542	SNHG3-201	SNHG3
-chr1	28835070	28835274	+	ENST00000363217.1	ENSG00000200087.1	405.75077607951	4285.77606509813	SNORA73B-201	SNORA73B
+chr1	28835070	28835274	+	ENST00000363217.1	ENSG00000200087.1	405.750776079509	4285.77606509813	SNORA73B-201	SNORA73B
 chr1	52877113	52877194	+	ENST00000458879.1	ENSG00000239063.1	5.67717135255281	43.8263600366656	snoU13.369-201	snoU13
 chr1	93303574	93303627	+	ENST00000515986.1	ENSG00000251795.1	0	9.56855839075449	SNORA66.1-201	SNORA66
 chr1	113195209	113195310	+	ENST00000459345.1	ENSG00000238975.1	0	10.0422494001978	snoU13.325-201	snoU13
@@ -13,7 +13,7 @@ chr1	31408534	31408620	-	ENST00000363284.1	ENSG00000200154.1	21.3884130026408	47
 chr1	31421963	31422049	-	ENST00000365237.1	ENSG00000202107.1	0	5.89690226406963	SNORD103B-201	SNORD103B
 chr1	31441010	31441083	-	ENST00000363311.1	ENSG00000200181.1	6.29932711721613	20.8411066319173	SNORD85-201	SNORD85
 chr1	54236690	54236826	-	ENST00000364133.1	ENSG00000201003.1	0	7.45784698102924	SNORA58.1-201	SNORA58
-chr1	155385348	155385453	-	ENST00000458873.1	ENSG00000238805.1	8.75906437251005	43.4685938322847	snoU13.251-201	snoU13
+chr1	155385348	155385453	-	ENST00000458873.1	ENSG00000238805.1	8.75906437251004	43.4685938322847	snoU13.251-201	snoU13
 chr1	155895748	155895877	-	ENST00000516999.1	ENSG00000252808.1	17.8236775022007	55.0377544646499	SCARNA4-201	SCARNA4
 chr1	173833283	173833360	-	ENST00000363840.1	ENSG00000234741.3	5.97208934489321	98.7922587097379	GAS5-202	GAS5
 chr1	173833506	173833583	-	ENST00000365524.1	ENSG00000234741.3	41.8046254142525	92.2061081290887	GAS5-206	GAS5
@@ -27,27 +27,27 @@ chr2	234184372	234184648	+	ENST00000516201.1	ENSG00000252010.1	26.6580220032914
 chr2	234197321	234197586	+	ENST00000515982.1	ENSG00000251791.1	38.1762994349023	88.0307371949413	SCARNA6-201	SCARNA6
 chr2	10586839	10586975	-	ENST00000383906.1	ENSG00000206633.1	37.1938211406217	220.006485940362	SNORA80B-201	SNORA80B
 chr2	101889397	101889511	-	ENST00000390981.1	ENSG00000212283.1	0	17.7941612178943	SNORD89-201	SNORD89
-chr2	232320510	232320647	-	ENST00000384158.1	ENSG00000206885.1	0	51.8238709922616	SNORA75-201	SNORA75
+chr2	232320510	232320647	-	ENST00000384158.1	ENSG00000206885.1	0	51.8238709922615	SNORA75-201	SNORA75
 chr3	39452544	39452697	+	ENST00000365493.1	ENSG00000202363.1	3.00556130429266	16.5729932911761	SNORA62-201	SNORA62
 chr3	175457058	175457164	+	ENST00000606657.1	ENSG00000271842.1	0	4.78427919537725	snoU13.470-201	snoU13
 chr3	185160006	185160107	+	ENST00000459417.1	ENSG00000239146.1	0	5.02112470009889	snoU13.413-201	snoU13
-chr3	186504463	186504641	+	ENST00000408493.2	ENSG00000221420.2	550.27099632356	2008.59092286821	SNORA81-201	SNORA81
+chr3	186504463	186504641	+	ENST00000408493.2	ENSG00000221420.2	550.270996323559	2008.59092286821	SNORA81-201	SNORA81
 chr3	186505088	186505220	+	ENST00000363450.1	ENSG00000200320.1	149.799907734405	587.813939322941	SNORA63-201	SNORA63
 chr3	186505400	186505538	+	ENST00000584302.1	ENSG00000263776.1	53.3160440065829	150.670125964562	SNORA4-201	SNORA4
-chr3	41940602	41940745	-	ENST00000390843.2	ENSG00000212145.2	9.64722124944288	24.8247214193701	U8.14-201	U8
+chr3	41940602	41940745	-	ENST00000390843.2	ENSG00000212145.2	9.64722124944288	24.82472141937	U8.14-201	U8
 chr3	129116052	129116191	-	ENST00000384360.1	ENSG00000207088.1	0	32.8359881466899	SNORA7B-201	SNORA7B
 chr4	1976362	1976487	+	ENST00000503991.1	ENSG00000249784.1	80.9337548019928	178.511025337916	SCARNA22-001	SCARNA22
 chr4	57860240	57860336	+	ENST00000459266.1	ENSG00000238579.1	0	31.6958496693743	snoU13.144-201	snoU13
 chr4	119200344	119200475	+	ENST00000384096.1	ENSG00000269893.2	17.5515602884266	178.077445470683	SNHG8-201	SNHG8
 chr5	85916322	85916385	+	ENST00000362392.1	ENSG00000199262.1	94.8898640355255	241.492187957137	MIR3607-201	MIR3607
-chr5	111497181	111497314	+	ENST00000458790.1	ENSG00000238363.1	10.372576230604	34.3173109202248	SNORA13-201	SNORA13
+chr5	111497181	111497314	+	ENST00000458790.1	ENSG00000238363.1	10.372576230604	34.3173109202247	SNORA13-201	SNORA13
 chr5	138611868	138612009	+	ENST00000516404.1	ENSG00000252213.1	32.6135375572183	115.09414915404	SNORA74.4-201	SNORA74
 chr5	138614469	138614667	+	ENST00000364089.1	ENSG00000200959.1	102.189084345951	801.680884566799	SNORA74A-201	SNORA74A
 chr5	172447730	172447931	+	ENST00000391100.1	ENSG00000212402.1	70.9222749565179	219.505585769995	SNORA74B-201	SNORA74B
 chr5	76376258	76376396	-	ENST00000458862.1	ENSG00000238961.1	0	77.1725035428243	SNORA47-201	SNORA47
 chr5	82360022	82360156	-	ENST00000459004.1	ENSG00000238835.1	13.726891927068	64.3378441049985	SCARNA18-201	SCARNA18
 chr5	137894658	137894728	-	ENST00000411005.1	ENSG00000222937.1	0	28.9790625548565	SNORD63.1-201	SNORD63
-chr5	137896731	137896799	-	ENST00000384262.1	ENSG00000206989.1	33.8125646732925	82.0363167913216	SNORD63-201	SNORD63
+chr5	137896731	137896799	-	ENST00000384262.1	ENSG00000206989.1	33.8125646732924	82.0363167913216	SNORD63-201	SNORD63
 chr6	31590855	31590987	+	ENST00000363946.1	ENSG00000200816.1	31.3534690606894	161.360689225905	SNORA38-201	SNORA38
 chr6	31804852	31804919	+	ENST00000364884.1	ENSG00000201754.1	109.815135416544	227.074743899995	SNORD52-201	SNORD52
 chr6	111284668	111284772	+	ENST00000458794.1	ENSG00000238775.1	30.9515015086292	73.1442684677867	snoU13.238-201	snoU13
@@ -78,7 +78,7 @@ chr9	136217310	136217383	+	ENST00000362874.1	ENSG00000199744.1	31.4966355860806
 chr9	95054742	95054875	-	ENST00000459229.1	ENSG00000239183.1	41.490304922416	221.156003708115	SNORA84-201	SNORA84
 chr9	119943344	119943479	-	ENST00000384538.1	ENSG00000207268.1	0	3.75654514599991	SNORA70C-201	SNORA70C
 chr9	139620556	139620686	-	ENST00000362567.2	ENSG00000233016.2	166.253779532066	499.331539406757	SNHG7-201	SNHG7
-chr9	139621199	139621331	-	ENST00000391185.1	ENSG00000233016.2	17.4185939226052	69.1545810968166	SNHG7-202	SNHG7
+chr9	139621199	139621331	-	ENST00000391185.1	ENSG00000233016.2	17.4185939226052	69.1545810968165	SNHG7-202	SNHG7
 chr10	70514928	70514995	+	ENST00000408255.1	ENSG00000221182.1	0	15.1383162599996	SNORD98-201	SNORD98
 chr10	101996912	101997059	-	ENST00000391162.1	ENSG00000212464.1	118.873016484065	527.832925106314	SNORA12-201	SNORA12
 chr11	8705773	8705903	+	ENST00000364113.1	ENSG00000200983.1	21.2238867487743	97.5256912903823	SNORA3-201	SNORA3
@@ -100,7 +100,7 @@ chr12	132515768	132515904	+	ENST00000386157.1	ENSG00000208892.1	20.2875388039755
 chr12	6690639	6690775	-	ENST00000516089.1	ENSG00000251898.1	27.050051738634	67.1206228292631	SCARNA11-201	SCARNA11
 chr12	7076499	7076769	-	ENST00000459155.1	ENSG00000238795.1	86.8607216940579	214.123073321995	SCARNA12-201	SCARNA12
 chr12	40213551	40213685	-	ENST00000362701.1	ENSG00000199571.1	0	7.56915812999982	SNORA22.1-201	SNORA22
-chr12	49048164	49048301	-	ENST00000408564.2	ENSG00000221491.2	20.1394545791289	96.2443318427715	SNORA34-201	SNORA34
+chr12	49048164	49048301	-	ENST00000408564.2	ENSG00000221491.2	20.1394545791289	96.2443318427714	SNORA34-201	SNORA34
 chr12	49061239	49061376	-	ENST00000384583.1	ENSG00000207313.1	0	3.70170507087583	SNORA2B-201	SNORA2B
 chr12	57038810	57038885	-	ENST00000384304.1	ENSG00000207031.1	128.758246275898	304.280156825993	SNORD59A-201	SNORD59A
 chr12	110934156	110934226	-	ENST00000365465.1	ENSG00000202335.1	0	7.24476563871411	SNORD50.2-201	SNORD50
@@ -115,14 +115,14 @@ chr14	21865450	21865560	-	ENST00000363915.1	ENSG00000200785.1	0	18.4412216258178
 chr14	36256064	36256168	-	ENST00000458749.1	ENSG00000238718.1	4.42164307266132	14.6288536935573	snoU13.210-201	snoU13
 chr15	56247898	56248002	-	ENST00000459436.1	ENSG00000238513.1	8.84328614532264	24.3814228225956	snoU13.107-201	snoU13
 chr15	58892330	58892434	-	ENST00000458913.1	ENSG00000239100.1	0	14.6288536935573	snoU13.391-201	snoU13
-chr15	66639544	66639680	-	ENST00000516903.1	ENSG00000252712.1	3.38125646732925	33.5603114146316	SCARNA14-201	SCARNA14
+chr15	66639544	66639680	-	ENST00000516903.1	ENSG00000252712.1	3.38125646732924	33.5603114146316	SCARNA14-201	SCARNA14
 chr16	2015184	2015311	+	ENST00000459373.1	ENSG00000255198.3	25.3461114716334	151.740760621886	SNHG9-201	SNHG9
 chr16	30721857	30721986	+	ENST00000384028.1	ENSG00000206755.1	14.2589420017605	98.2817044011605	SNORA30-201	SNORA30
-chr16	2012334	2012467	-	ENST00000384084.1	ENSG00000206811.1	34.5752541020133	72.4476563871412	SNORA10-201	SNORA10
+chr16	2012334	2012467	-	ENST00000384084.1	ENSG00000206811.1	34.5752541020133	72.4476563871411	SNORA10-201	SNORA10
 chr16	2012973	2013107	-	ENST00000384674.1	ENSG00000207405.1	439.260541666175	1759.82926522496	SNORA64-201	SNORA64
 chr16	47154829	47154932	-	ENST00000458876.1	ENSG00000238834.1	0	4.92362713310668	snoU13.262-201	snoU13
 chr16	58582402	58582537	-	ENST00000384762.1	ENSG00000207493.1	10.2189084345951	48.8350868979988	SNORA46-201	SNORA46
-chr16	58593699	58593835	-	ENST00000384225.2	ENSG00000206952.2	3.38125646732925	59.6627758482339	SNORA50-201	SNORA50
+chr16	58593699	58593835	-	ENST00000384225.2	ENSG00000206952.2	3.38125646732924	59.6627758482339	SNORA50-201	SNORA50
 chr16	71732469	71732604	-	ENST00000578836.1	ENSG00000263666.1	0	7.51309029199982	SNORA70D-001	SNORA70D
 chr16	71792304	71792390	-	ENST00000411292.1	ENSG00000223224.1	0	5.89690226406963	SNORD71-201	SNORD71
 chr17	7478030	7478165	+	ENST00000386847.1	ENSG00000209582.1	85.1575702882921	458.298507811989	SNORA48-201	SNORA48
@@ -150,8 +150,8 @@ chr19	12817262	12817332	-	ENST00000386967.1	ENSG00000209702.1	0	7.24476563871411
 chr20	2634857	2634932	+	ENST00000408189.1	ENSG00000221116.1	0	13.5235625255997	SNORD110-201	SNORD110
 chr20	2635712	2635844	+	ENST00000606420.1	ENSG00000271798.1	6.96743756904208	130.625319849542	SNORA51-201	SNORA51
 chr20	2637269	2637340	+	ENST00000413522.1	ENSG00000229686.1	6.47677295150391	28.5709067442247	SNORD56-001	SNORD56
-chr20	37078012	37078146	+	ENST00000362396.1	ENSG00000199266.1	3.431722981767	15.1383162599996	SNORA60-201	SNORA60
-chr20	47896855	47896946	+	ENST00000410433.1	ENSG00000222365.1	55.5863700563138	222.915865806588	SNORD12B-201	SNORD12B
+chr20	37078012	37078146	+	ENST00000362396.1	ENSG00000199266.1	3.43172298176699	15.1383162599996	SNORA60-201	SNORA60
+chr20	47896855	47896946	+	ENST00000410433.1	ENSG00000222365.1	55.5863700563137	222.915865806588	SNORD12B-201	SNORD12B
 chr20	47897219	47897309	+	ENST00000391002.1	ENSG00000212304.1	25.5472710864876	236.662344197994	SNORD12-201	SNORD12
 chr20	2443607	2443683	-	ENST00000515997.1	ENSG00000251806.1	18.152008403557	73.4009150238141	SNORD119-201	SNORD119
 chr20	37053845	37053979	-	ENST00000364546.1	ENSG00000235408.2	17.158614908835	71.9070022349983	SNORA71B-201	SNORA71B
@@ -162,7 +162,7 @@ chr21	40717299	40717383	-	ENST00000459446.1	ENSG00000238556.1	10.9488304656376	4
 chr22	20113924	20114049	+	ENST00000578179.1	ENSG00000264346.1	11.0364211093627	24.3424125460794	SNORA77.4-201	SNORA77
 chr22	39715054	39715118	-	ENST00000583861.1	ENSG00000263764.1	0	15.8479248346871	SNORD43-201	SNORD43
 chrX	15734330	15734469	+	ENST00000363750.1	ENSG00000200620.1	3.30827970904156	14.5937725096399	SNORA7.1-201	SNORA7
-chrX	54840802	54840930	+	ENST00000408789.1	ENSG00000221716.1	68.2591149342092	245.64283493765	SNORA11-201	SNORA11
+chrX	54840802	54840930	+	ENST00000408789.1	ENSG00000221716.1	68.2591149342091	245.64283493765	SNORA11-201	SNORA11
 chrX	153628621	153628756	+	ENST00000384436.1	ENSG00000207165.1	0	33.8089063139992	SNORA70-201	SNORA70
 chrX	153996802	153996934	+	ENST00000384221.1	ENSG00000206948.1	17.4185939226052	42.261132892499	SNORA36A-201	SNORA36A
 chrX	154003272	154003401	+	ENST00000383966.1	ENSG00000206693.1	7.12947100088027	19.6563408802321	SNORA56-201	SNORA56
@@ -179,7 +179,7 @@ chr1	148604907	148605072	-	ENST00000384476.1	ENSG00000207205.1	0	3.0735369376362
 chr1	149224057	149224221	-	ENST00000384010.1	ENSG00000206737.1	0	12.3691120660973	RNVU1-18-201	RNVU1-18
 chr1	155328502	155328609	-	ENST00000384405.1	ENSG00000207134.1	4.29767177155867	18.9582652228033	RNU6-106P-201	RNU6-106P
 chr2	201763742	201763844	+	ENST00000517107.1	ENSG00000252916.1	9.01668391287799	19.8875919494113	RNU6-762P-201	RNU6-762P
-chr2	201944564	201944667	+	ENST00000516339.1	ENSG00000252148.1	4.46457164618231	19.6945085324267	RNU6-1206P-201	RNU6-1206P
+chr2	201944564	201944667	+	ENST00000516339.1	ENSG00000252148.1	4.4645716461823	19.6945085324267	RNU6-1206P-201	RNU6-1206P
 chr2	236945893	236945955	+	ENST00000458845.1	ENSG00000238812.1	7.4169496702706	24.5387223246768	RNU7-127P-201	RNU7-127P
 chr2	55241553	55241657	-	ENST00000363216.1	ENSG00000200086.1	0	9.75256912903823	RNU6-433P-201	RNU6-433P
 chr3	12556204	12556306	+	ENST00000515965.1	ENSG00000251774.1	0	4.97189798735282	RNU6-377P-201	RNU6-377P
@@ -202,7 +202,7 @@ chr8	129011376	129011540	+	ENST00000384382.1	ENSG00000207110.1	2.80396877778523
 chr8	81661795	81661928	-	ENST00000391127.1	ENSG00000212429.1	0	7.62606909338328	RNU11-6P-201	RNU11-6P
 chr9	33868537	33868663	+	ENST00000515939.1	ENSG00000251748.1	7.29922031042504	72.4476563871412	RNU4ATAC11P-201	RNU4ATAC11P
 chr10	35424370	35424430	+	ENST00000517245.1	ENSG00000253054.1	15.3283626518926	33.8089063139992	RNU7-77P-201	RNU7-77P
-chr10	88649325	88649490	+	ENST00000363306.1	ENSG00000200176.1	2.78697502761683	9.22061081290888	RNU1-19P-201	RNU1-19P
+chr10	88649325	88649490	+	ENST00000363306.1	ENSG00000200176.1	2.78697502761683	9.22061081290887	RNU1-19P-201	RNU1-19P
 chr10	1088232	1088295	-	ENST00000459467.1	ENSG00000238924.1	7.29922031042504	24.1492187957137	RNU7-163P-201	RNU7-163P
 chr10	27521183	27521245	-	ENST00000516030.1	ENSG00000251839.1	0	16.3591482164512	RNU7-12P-201	RNU7-12P
 chr10	73604491	73604551	-	ENST00000459501.1	ENSG00000238446.1	0	16.9044531569996	RNU7-38P-201	RNU7-38P
@@ -217,7 +217,7 @@ chr12	42792351	42792453	+	ENST00000363016.1	ENSG00000199886.1	18.033367825756	39
 chr12	57904846	57904918	+	ENST00000517056.1	ENSG00000252865.1	6.38681777162191	14.0870442974997	RNU6-594P-201	RNU6-594P
 chr12	15824640	15824744	-	ENST00000363235.1	ENSG00000200105.1	0	4.87628456451912	RNU6-251P-201	RNU6-251P
 chr12	56746170	56746234	-	ENST00000516397.1	ENSG00000252206.1	0	7.92396241734356	RNU7-40P-201	RNU7-40P
-chr12	110005779	110005920	-	ENST00000363404.1	ENSG00000200274.1	3.26135375572183	39.5636137717012	RNU4-32P-201	RNU4-32P
+chr12	110005779	110005920	-	ENST00000363404.1	ENSG00000200274.1	3.26135375572182	39.5636137717012	RNU4-32P-201	RNU4-32P
 chr13	22125442	22125549	-	ENST00000384787.1	ENSG00000207518.1	4.29767177155867	23.6978315285041	RNU6-59P-201	RNU6-59P
 chr14	35314505	35314566	-	ENST00000515917.1	ENSG00000251726.1	15.077078018255	33.2546619481959	RNU7-41P-201	RNU7-41P
 chr14	58759010	58759106	-	ENST00000516973.1	ENSG00000252782.1	4.79011332871643	21.1305664462495	RNU6-341P-201	RNU6-341P