Explore projects
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BICF / Astrocyte / DAStk_modified
BSD 3-Clause "New" or "Revised" LicenseUpdated -
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Notebooks and scripts provided here can be used for analyzing data files generated by Tecan and Biotek plate readers.
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Simple Gears to help you start your own development at UT Southwestern
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Files from the Advanced Concepts of Deep Learning Nanocourse
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Journal Club for foundational machine learning topics
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Cooper Mellema / AutismProject
BSD 3-Clause Clear LicenseUpdated -
BFei's student group project placenta segmentator
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Course material for machine learning course offered to UTSW community.
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BICF / Software / TReNCo
MIT LicenseTAD aware Regulatory Network Construction (TReNCo). The package provides scripts for constructing cell-type specific mouse TF-gene networks.
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Cooper Mellema / Parkinsons Prognosis
BSD 3-Clause Clear LicenseCooper Mellema - MSTP student Parkinson's MRI & MEG machine learning identification and classification project
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Cooper Mellema / CausalMeasures
BSD 3-Clause Clear LicenseCreated by Cooper Mellema in Dr. Montillo's Deep Learning Lab University of Texas Southwestern Medical Center Lyda Hill Dept. of Bioinformatics Project centered around using different causal measures to infer Effective connectivity and DL properties
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Ahmed Abbas / ChIPr
OtherThree variants of regression models based on deep neural networks, random forest, and gradient boosting to predict chromatin interaction strength.
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This is a set of python and R routines for converting imaging and mask information to radiomic features and perform simple classification task.
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Ahmed Abbas / CNN-ChIPr
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Jefferson Chen / Multi-sc
MIT LicenseUpdated