Explore projects
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GUDMAP_RBK / RNA-seq
MIT LicenseUpdated -
Encapsulates the migration of data from genomeseer database, integration of Clarity data and visualization via a web application
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Vishruth Mullapudi / abundanceparser
MIT LicenseUpdated -
BICF / Software / TReNCo
MIT LicenseTAD aware Regulatory Network Construction (TReNCo). The package provides scripts for constructing cell-type specific mouse TF-gene networks.
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Holly Ruess / celseq2
BSD 3-Clause "New" or "Revised" LicenseUpdated -
BioHPC / pyslurm
GNU General Public License v2.0 or laterPySlurm with fixes on the 16.05.5 branch to allow use with Python 3.6+
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BICF / Astrocyte / cellranger_count
MIT LicenseUpdated -
Prototype of a web page that can search through a list of genes from user input and return the associated symbols.
Can search by synonyms and symbols.
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BioHPC / singularity
BSD 3-Clause "New" or "Revised" LicenseBioHPC Singularity tree with non-core patches
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BioHPC / clair-singularity
BSD 3-Clause "New" or "Revised" LicenseScan Singularity container images using a Clair server
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Quick and dirty singularity bootstrap definitions for all biocontainers.
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Accession Research Samples into Clarity. Creates a project based on the current month or uses existing month project if it already exists.
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BioHPC / param_runner
GNU General Public License v3.0 or laterParameter exploration job runner for the BioHPC nucleus cluster.
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