Commits · 0bf417d4c32f2f69908b2df1ae5f83ea74c58a87 · David Trudgian / rnaseq_nextflow

29 Jun, 2016 2 commits
- Try to fix freezes under valid and invalid design file conditions · 0bf417d4
  David Trudgian authored Jun 29, 2016
  
  0bf417d4
- removed spaces astrocyte_pkg.yml · 22c3f7cf
  Brandi Cantarel authored Jun 29, 2016
  
  22c3f7cf
28 Jun, 2016 1 commit
- fixing se mode and add dedup option · 1bcd46a3
  Brandi Cantarel authored Jun 28, 2016
  
  1bcd46a3
27 Jun, 2016 3 commits
- Fix routing for PE/SE channels · 3861d9ad
  David Trudgian authored Jun 27, 2016
  
  3861d9ad
- update single-end part of code · 0a261ff0
  Brandi Cantarel authored Jun 27, 2016
  
  0a261ff0
- update single-end part of code · c07a6a71
  Brandi Cantarel authored Jun 27, 2016
  
  c07a6a71
22 Jun, 2016 1 commit
- updating tags · bfa008bc
  Brandi Cantarel authored Jun 22, 2016
  
  bfa008bc
16 Jun, 2016 1 commit
- update defaults pairs · 1f8a21d9
  Brandi Cantarel authored Jun 16, 2016
  
  1f8a21d9
13 Jun, 2016 1 commit
- adding paired option · 3ec5f1a8
  Brandi Cantarel authored Jun 13, 2016
  
  3ec5f1a8
16 May, 2016 2 commits
- Merge branch 'master' of git.biohpc.swmed.edu:brandi.cantarel/rnaseq_nextflow · eadce2e7
  Brandi Cantarel authored May 16, 2016
  
  eadce2e7
- adding documentation · 58cfb276
  Brandi Cantarel authored May 16, 2016
  
  58cfb276
15 May, 2016 5 commits
- Workflow runs through OK · 9817c416
  David Trudgian authored May 15, 2016
  
  9817c416
- concat_cts.pl - use basename instead of stripping slashes · f0be2bb2
  David Trudgian authored May 15, 2016
  
  f0be2bb2
- No gene entries in iGenomes gtf - CHECK WITH BRANDI · 8346fe65
  David Trudgian authored May 15, 2016
  
  8346fe65
- Add additional fields for test design.txt · 6fe9786a
  David Trudgian authored May 15, 2016
  
  6fe9786a
- Test data retrieval script · 7d5cba84
  David Trudgian authored May 15, 2016
  
  7d5cba84
14 May, 2016 2 commits
- Create genenames file in workflow · 29822885
  David Trudgian authored May 14, 2016
  
  29822885
- Use glob pattern to accept multiple files from web · d8209e96
  David Trudgian authored May 14, 2016
  
  d8209e96
19 Apr, 2016 3 commits
- Nextflof main.nf fixes · 6fbd26ef
  David Trudgian authored Apr 19, 2016
  
  6fbd26ef
- build_ballgown.R missing bracket · 69553828
  David Trudgian authored Apr 19, 2016
  
  69553828
- Add back test_data dir · 2962b1d0
  David Trudgian authored Apr 19, 2016
  
  2962b1d0
15 Apr, 2016 2 commits
- Whoops - fix so it passes metadata validation · dbc54f73
  David Trudgian authored Apr 15, 2016
  
  dbc54f73
- Parameterize workflow some more · 58c2f122
  David Trudgian authored Apr 15, 2016
  
  58c2f122
13 Apr, 2016 1 commit
- first try again · 216212b1
  Brandi Cantarel authored Apr 13, 2016
  
  216212b1