Commit a107015b authored by Raquel Bromberg's avatar Raquel Bromberg

A few lines were commented out previously for a test run. Commenting was removed.

parent ba917a68
......@@ -127,8 +127,8 @@ int main(int argc, char* argv[])
cout<<"Deleting previous FAA_mobelim and FAA_ref_mobelim, if they exist..."<<endl;
u.rm_mkdir(path+"/"+bfn+"/"+"/","FAA_mobelim");
u.rm_mkdir(path+"/"+bfn+"/"+"/","FAA_ref_mobelim");
// u.rm_mkdir(path+"/"+bfn+"/"+"/","FAA_mobkept");
// u.rm_mkdir(path+"/"+bfn+"/"+"/","FAA_ref_mobkept");
u.rm_mkdir(path+"/"+bfn+"/"+"/","FAA_mobkept");
u.rm_mkdir(path+"/"+bfn+"/"+"/","FAA_ref_mobkept");
if(write_out_mefiltered)
{
u.rm_mkdir(path+"/"+bfn+"/"+"/","MEFILTERED");
......@@ -208,12 +208,12 @@ int main(int argc, char* argv[])
if(i<ref_set_size) //if current organism is a reference org
{
u.rm_mkdir(path+"/"+bfn+"/"+"/FAA_ref_mobelim/",orgdir);
// u.rm_mkdir(path+"/"+bfn+"/"+"/FAA_ref_mobkept/",orgdir);
u.rm_mkdir(path+"/"+bfn+"/"+"/FAA_ref_mobkept/",orgdir);
}
else
{
u.rm_mkdir(path+"/"+bfn+"/"+"/FAA_mobelim/",orgdir);
// u.rm_mkdir(path+"/"+bfn+"/"+"/FAA_mobkept/",orgdir);
u.rm_mkdir(path+"/"+bfn+"/"+"/FAA_mobkept/",orgdir);
}
logstream<<"i="<<i<<endl;
......
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