Commit 98ae3b65 authored by Raquel Bromberg's avatar Raquel Bromberg

cm.cpp and mctr.h sped up: In mctr, get_aa(...) replaced wtih 2 static arrays,...

cm.cpp and mctr.h sped up: In mctr, get_aa(...) replaced wtih 2 static arrays, vector .at() calls replaced by [], increment_bits_it0(...) rewritten with get_score(...) function called only once per sequence.
parent 85b8053f
......@@ -48,7 +48,7 @@ int main(int argc, char* argv[])
cout<<"Calling run on real data"<<endl;
mctr m(full_path,"",fs,fo,partial_run);
m.run_it0();
cout<<"Calling run on scrambled data"<<endl;
mctr mscr(full_path,"scr",fs,fo,partial_run);
mscr.run_it0();
......
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