Commit 98ae3b65 authored by Raquel Bromberg's avatar Raquel Bromberg
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cm.cpp and mctr.h sped up: In mctr, get_aa(...) replaced wtih 2 static arrays,...

cm.cpp and mctr.h sped up: In mctr, get_aa(...) replaced wtih 2 static arrays, vector .at() calls replaced by [], increment_bits_it0(...) rewritten with get_score(...) function called only once per sequence.
parent 85b8053f
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