Some commented lines removed

makefile

 CPPFLAGS=-O3
 
-all: mif sttag tmerg filt fmerg cm mdist fh dbc mtax
+all: mif sttag tmerg mef filt fmerg cm mdist fh dbc mtax fpwrite dent
 
 mif: mif.cpp directory_reader.h
 	g++ $(CPPFLAGS)  mif.cpp -o mif
@@ -11,6 +11,9 @@ sttag: sttag.cpp sttagger.h org.h util.h amino_acids.h
 tmerg: tmerg.cpp tmerg.h
 	g++ $(CPPFLAGS)  tmerg.cpp -fopenmp -o tmerg
 
+mef: mefilter.cpp 
+	g++ $(CPPFLAGS) mefilter.cpp -fopenmp -o mef
+
 filt: filter.cpp filter.h
 	g++ $(CPPFLAGS)  filter.cpp -o filt
 
@@ -19,22 +22,25 @@ fmerg: fmerg.cpp util.h
 
 cm: cm.cpp util.h
 	g++ $(CPPFLAGS)  cm.cpp -fopenmp -o cm
-#	g++ $(CPPFLAGS)  cm.cpp -o cm	
 
 dbc: dbc.cpp
 	g++ $(CPPFLAGS)  dbc.cpp -fopenmp -o dbc
 
 mdist: mdist.cpp mdist.h
 	g++ $(CPPFLAGS)  mdist.cpp -fopenmp -o mdist
-#	g++ $(CPPFLAGS)  mdist.cpp -o mdist	
 
 fh: fix_hgt.cpp mdist.h mctr.h
 	g++ $(CPPFLAGS)  fix_hgt.cpp -fopenmp -o fh
-#	g++ $(CPPFLAGS)  fix_hgt.cpp -o fh	
 
 mtax: mtax.cpp
 	g++ $(CPPFLAGS)  mtax.cpp -o mtax
 
+fpwrite: fpwrite.cpp
+	g++ $(CPPFLAGS)  fpwrite.cpp -o fpwrite
+
+dent: dentrop.cpp
+	g++ $(CPPFLAGS) dentrop.cpp -o dent
+
 clean:
 	\rm mif
 	\rm sttag
@@ -46,4 +52,5 @@ clean:
 	\rm fh
 	\rm dbc	
 	\rm mtax
+	\rm dent
 	\rm *~