Commit 0bbe0bf3 authored by PLian's avatar PLian

Update yaml file

parent 416472ba
Pipeline #7913 failed with stages
in 1 second
......@@ -2,3 +2,4 @@ workflow/work
workflow/*.html
workflow/*.csv
.history
# Run our tests against a specific version of astrocyte
before_script:
- module load astrocyte/0.1.0
- module load astrocyte/0.4.0
stages:
......
......@@ -9,7 +9,7 @@
# A unique identifier for the workflow package, text/underscores only
name: 'example_wordcount'
# Who wrote this?
author: 'David Trudgian'
author: 'David Trudgian, Peng Lian'
# A contact email address for questions
email: 'biohpc-help@utsouthwestern.edu'
# A more informative title for the workflow package
......@@ -18,15 +18,18 @@ title: 'Example Wordcount Workflow'
description: |
This is a minimal test workflow package that counts the occurences of words
in a test file. It can be used as a template to develop workflows, and as to
test the astrocyte platform.
test the astrocyte platform. Please note that start from publish version
0.0.8 and test version 0.0.2, this workflow will only support Astrocyte 0.4.0
and above.
#### New Features in Astrocyte 0.4.0 and above ####
# The Astrocyte version it requires to run this workflow
astrocyte_version: '0.4.0'
# The Nextflow version it requires to run this workflow
nextflow_version: '20.01.0'
# (Optional) The Nextflow config file to use for this workflow. If provided, the file should exist in workflow/configs
nextflow_config: 'biohpc.config'
# The container to use for this workflow, none/singularity. If missing the default value 'none' will be used.
# The container to use for this workflow, none/singularity. If omitted, the default value 'none' will be used.
container: 'singularity'
# The version of singularity to use. This is required if container == 'singularity'
singularity_version: '3.5.3'
......
process {
executor = 'local'
}
executor {
name = 'local'
cpus = 1
......
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