Update CI to use new biohpc.config files

10 jobs for containerized_vizapp in 66 minutes and 4 seconds (queued for 4 seconds)
latest
Status Job ID Name Coverage
  Check
passed astrocyte_check #142683
cluster_node

00:15:36

 
  Test
passed astrocyte_shiny #142687

00:18:03

passed astrocyte_test #142686
cluster_node

00:00:51

passed nextflow_test_docker #142684
cluster_node

00:16:57

passed nextflow_test_singularity #142685
cluster_node

00:00:10

 
  Test Docker
passed docker_astrocyte_test #142688
cluster_node

00:15:44

 
  Test Singularity
failed singularity_astrocyte_test #142689

00:00:05

 
  Cache Docker
passed cache_docker_image #142690

00:15:32

 
  Test Gitlab
skipped docker_gitlab_test #142691
cluster_node
skipped singularity_gitlab_test #142692
cluster_node
 
Name Stage Failure
failed
singularity_astrocyte_test Test Singularity
drwxr-xr-x  2 s190450 biohpc_admin 4.0K Jul 22 16:30 vizapp
drwxr-xr-x 10 s190450 biohpc_admin 4.0K Jul 22 16:30 ..
$ whoami
s190450
$ astrocyte_cli run "$CI_PROJECT_DIR" --option=q
bash: astrocyte_cli: command not found
Running after_script
Uploading artifacts for failed job
ERROR: Job failed: exit status 1