Commit eb877144 authored by Devin OKelly's avatar Devin OKelly
Browse files

Preserve artifacts for various nextflow runs.

parent 7b8661ac
......@@ -54,6 +54,9 @@ nextflow_test_docker:
- module load singularity/3.5.3
- cd $CI_PROJECT_DIR/workflow
- nextflow -C $CI_PROJECT_DIR/workflow/configs/biohpc_docker.config run main.nf -with-trace -with-timeline -resume --verbose
artifacts:
paths:
- $CI_PROJECT_DIR/workflow/.nextflow.log
nextflow_test_singularity:
......@@ -63,6 +66,10 @@ nextflow_test_singularity:
- module load singularity/3.5.3
- cd $CI_PROJECT_DIR/workflow
- nextflow -C $CI_PROJECT_DIR/workflow/configs/biohpc_singularity.config run main.nf -with-trace -with-timeline -resume --verbose
artifacts:
paths:
- $CI_PROJECT_DIR/workflow/.nextflow.log
# This runs the workflow with test data and does a simple
......@@ -73,7 +80,9 @@ astrocyte_test:
script:
- astrocyte_cli test "$CI_PROJECT_DIR" --verbose
- test -s "$CI_PROJECT_DIR/workflow/output/mobydick.txt.uppercase.tolines.wordcount"
artifacts:
paths:
- $CI_PROJECT_DIR/workflow/.nextflow.log
# This runs the workflow, opting to use Docker containers.
docker_astrocyte_test:
stage: test_docker
......
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