Commit d1fef9ea authored by David Trudgian's avatar David Trudgian

Merge branch 'updateR' into 'master'

Bump R for vizapp, add some commented features to metadata file

See merge request !2
parents 65bc885d f7bca102
Pipeline #2930 passed with stages
in 39 seconds
...@@ -50,12 +50,13 @@ workflow_modules: ...@@ -50,12 +50,13 @@ workflow_modules:
# REQUIRED INFORMATION # REQUIRED INFORMATION
# id: The name of the parameter in the NEXTFLOW workflow # id: The name of the parameter in the NEXTFLOW workflow
# type: The type of the parameter, one of: # type: The type of the parameter, one of:
# string - A free-format string # string - A free-format string
# integer - An integer # integer - An integer
# real - A real number # real - A real number
# file - A single file from user data # file - A single file from user data
# files - One or more files from user data # files - One or more files from user data
# select - A selection from a list of values # select - A selection from a list of values
# multiselect - One or more selections from a list of values
# required: true/false, must the parameter be entered/chosen? # required: true/false, must the parameter be entered/chosen?
# description: A user friendly description of the meaning of the parameter # description: A user friendly description of the meaning of the parameter
# #
...@@ -96,7 +97,7 @@ workflow_parameters: ...@@ -96,7 +97,7 @@ workflow_parameters:
# The workflow must publish all final output into $baseDir # The workflow must publish all final output into $baseDir
# Name of the R module that the vizapp will run against # Name of the R module that the vizapp will run against
vizapp_r_module: 'R/3.2.1-intel' vizapp_r_module: 'R/3.4.1-gccmkl'
# List of any CRAN packages, not provided by the modules, that must be made # List of any CRAN packages, not provided by the modules, that must be made
# available to the vizapp # available to the vizapp
...@@ -107,4 +108,13 @@ vizapp_cran_packages: ...@@ -107,4 +108,13 @@ vizapp_cran_packages:
# # List of any Bioconductor packages, not provided by the modules, that must be made # # List of any Bioconductor packages, not provided by the modules, that must be made
# available to the vizapp # available to the vizapp
vizapp_bioc_packages: vizapp_bioc_packages:
- chipseq -
# # List of any packages to install from GitHub using devtools, that must be
# made availavle to the vizapp
vizapp_github_packages:
-
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