Commit c55c2e38 authored by Devin OKelly's avatar Devin OKelly
Browse files

Fix CI lint issues, use escaped colon sequence \x3A

parent 4b4cc7a7
......@@ -86,8 +86,7 @@ astrocyte_test:
docker_astrocyte_test:
stage: test_docker
script:
# Note the biohpc_docker.config replacement.
- sed -i 's|nextflow_config: \x27biohpc.config\x27|nextflow_config: \x27biohpc_docker.config\x27|' astrocyte_pkg.yml
- sed -i 's|nextflow_config\x3A \x27biohpc.config\x27|nextflow_config\x3A \x27biohpc_docker.config\x27|' astrocyte_pkg.yml
- echo "Run astrocyte using dockerhub/docker.io registry pulls"
- astrocyte_cli run "$CI_PROJECT_DIR" --option=bg
- test -s "$CI_PROJECT_DIR/workflow/output/mobydick.txt.uppercase.tolines.wordcount"
......@@ -103,7 +102,7 @@ singularity_astrocyte_test:
stage: test_singularity
script:
# Note the biohpc_singularity.config replacement.
- sed -i 's|nextflow_config: \x27biohpc.config\x27|nextflow_config: \x27biohpc_singularity.config\x27|' astrocyte_pkg.yml
- sed -i 's|nextflow_config\x3A \x27biohpc.config\x27|nextflow_config\x3A \x27biohpc_singularity.config\x27|' astrocyte_pkg.yml
- echo "Run astrocyte using singularity with dockerhub/docker.io registry pulls"
- astrocyte_cli run "$CI_PROJECT_DIR" --option=bg
- test -s "$CI_PROJECT_DIR/workflow/output/mobydick.txt.uppercase.tolines.wordcount"
......
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