Commit 7f6620e2 authored by Devin OKelly's avatar Devin OKelly
Browse files

Update .gitlab-ci.yml file

parent 9af5bb5a
......@@ -5,6 +5,7 @@ stages:
- cache_docker
- test_singularity
- cache_singularity
- test_gitlab
variables:
GIT_STRATEGY: clone
......@@ -116,7 +117,7 @@ cache_docker_image:
- xargs -a containers.txt -I % docker push "$CI_REGISTRY/$CI_PROJECT_ROOT_NAMESPACE/$CI_PROJECT_NAME/%"
needs:
- docker_astrocyte_test
singularity_astrocyte_test:
stage: test_singularity
script:
......@@ -126,6 +127,33 @@ singularity_astrocyte_test:
- astrocyte_cli run "$CI_PROJECT_DIR" --option=q
- test -s "$CI_PROJECT_DIR/workflow/output/mobydick.txt.uppercase.tolines.wordcount"
docker_gitlab_test:
stage: test_gitlab
variables:
config_path : "workflow/configs/"
config_filename : "biohpc_docker_gitlab.config"
script:
- sed -i "s|nextflow_config\x3A \x27biohpc.config\x27|nextflow_config\x3A \x27${config_filename}\x27|" astrocyte_pkg.yml
- astrocyte_cli run "$CI_PROJECT_DIR" --option=q
- test -s "$CI_PROJECT_DIR/workflow/output/mobydick.txt.uppercase.tolines.wordcount"
tags:
- cluster_node
singularity_gitlab_test:
stage: test_gitlab
variables:
config_path : "workflow/configs/"
config_filename : "biohpc_singularity_gitlab.config"
script:
- sed -i "s|nextflow_config\x3A \x27biohpc.config\x27|nextflow_config\x3A \x27${config_filename}\x27|" astrocyte_pkg.yml
- astrocyte_cli run "$CI_PROJECT_DIR" --option=q
- test -s "$CI_PROJECT_DIR/workflow/output/mobydick.txt.uppercase.tolines.wordcount"
tags:
- cluster_node
cache_singularity_image:
stage: cache_singularity
script:
......
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