Commit 62d6a335 authored by Devin OKelly's avatar Devin OKelly
Browse files

Update astrocyte_cli to take Options, remove NXF_DEBUG

parent cbe7e6e4
......@@ -26,8 +26,6 @@ variables:
before_script:
- *all-script-before
- module load astrocyte/0.4.0
- NXF_DEBUG=3
- export NXF_DEBUG
tags:
- cluster_node
......@@ -79,7 +77,7 @@ astrocyte_test:
extends: .astrocyte
stage: test
script:
- astrocyte_cli test "$CI_PROJECT_DIR"
- astrocyte_cli test "$CI_PROJECT_DIR" --option=bg
- test -s "$CI_PROJECT_DIR/workflow/output/mobydick.txt.uppercase.tolines.wordcount"
artifacts:
paths:
......
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