Update astrocyte_cli to take Options, remove NXF_DEBUG

62d6a335 · Devin OKelly · cbe7e6e4 · 62d6a335
Commit 62d6a335 authored Jun 08, 2021 by Devin OKelly
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.gitlab-ci.yml .gitlab-ci.yml +1 -3

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--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -26,8 +26,6 @@ variables:
  before_script:
    - *all-script-before
    - module load astrocyte/0.4.0
-    - NXF_DEBUG=3
-    - export NXF_DEBUG
  tags:
    - cluster_node

@@ -79,7 +77,7 @@ astrocyte_test:
  extends: .astrocyte
  stage: test
  script:
-  - astrocyte_cli test "$CI_PROJECT_DIR" 
+  - astrocyte_cli test "$CI_PROJECT_DIR" --option=bg
  - test -s "$CI_PROJECT_DIR/workflow/output/mobydick.txt.uppercase.tolines.wordcount"
  artifacts:
    paths: