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BioHPC
astrocyte_example_wordcount
Commits
52430372
Commit
52430372
authored
Jun 14, 2021
by
Devin OKelly
Browse files
Update .gitlab-ci.yml file
parent
744c37a9
Changes
1
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.gitlab-ci.yml
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52430372
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@@ -147,6 +147,8 @@ singularity_gitlab_test:
config_path
:
"
workflow/configs/"
config_filename
:
"
biohpc_singularity_gitlab.config"
script
:
-
export SINGULARITY_DOCKER_USERNAME=${CI_REGISTRY_USER}
-
export SINGULARITY_DOCKER_PASSWORD=${CI_REGISTRY_PASSWORD}
-
sed -i "s|nextflow_config\x3A \x27biohpc.config\x27|nextflow_config\x3A \x27${config_filename}\x27|" astrocyte_pkg.yml
-
astrocyte_cli run "$CI_PROJECT_DIR" --option=q
-
test -s "$CI_PROJECT_DIR/workflow/output/mobydick.txt.uppercase.tolines.wordcount"
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