Commit 52430372 authored by Devin OKelly's avatar Devin OKelly
Browse files

Update .gitlab-ci.yml file

parent 744c37a9
......@@ -147,6 +147,8 @@ singularity_gitlab_test:
config_path : "workflow/configs/"
config_filename : "biohpc_singularity_gitlab.config"
script:
- export SINGULARITY_DOCKER_USERNAME=${CI_REGISTRY_USER}
- export SINGULARITY_DOCKER_PASSWORD=${CI_REGISTRY_PASSWORD}
- sed -i "s|nextflow_config\x3A \x27biohpc.config\x27|nextflow_config\x3A \x27${config_filename}\x27|" astrocyte_pkg.yml
- astrocyte_cli run "$CI_PROJECT_DIR" --option=q
- test -s "$CI_PROJECT_DIR/workflow/output/mobydick.txt.uppercase.tolines.wordcount"
......
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