Update .gitlab-ci.yml file

52430372 · Devin OKelly · 744c37a9 · 52430372
Commit 52430372 authored Jun 14, 2021 by Devin OKelly
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.gitlab-ci.yml .gitlab-ci.yml +2 -0

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--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -147,6 +147,8 @@ singularity_gitlab_test:
    config_path : "workflow/configs/"
    config_filename : "biohpc_singularity_gitlab.config"
  script:
+  - export SINGULARITY_DOCKER_USERNAME=${CI_REGISTRY_USER}
+  - export SINGULARITY_DOCKER_PASSWORD=${CI_REGISTRY_PASSWORD}
  - sed -i "s|nextflow_config\x3A \x27biohpc.config\x27|nextflow_config\x3A \x27${config_filename}\x27|" astrocyte_pkg.yml
  - astrocyte_cli run "$CI_PROJECT_DIR" --option=q
  - test -s "$CI_PROJECT_DIR/workflow/output/mobydick.txt.uppercase.tolines.wordcount"