Commit 2b6c7ee1 authored by Devin OKelly's avatar Devin OKelly
Browse files

Change astrocyte run to quiet instead of background to see if tests after that line succeed.

parent c55c2e38
......@@ -76,7 +76,7 @@ astrocyte_test:
extends: .astrocyte
stage: test
script:
- astrocyte_cli run "$CI_PROJECT_DIR" --option=bg
- astrocyte_cli run "$CI_PROJECT_DIR" --option=q
- test -s "$CI_PROJECT_DIR/workflow/output/mobydick.txt.uppercase.tolines.wordcount"
artifacts:
paths:
......@@ -88,7 +88,7 @@ docker_astrocyte_test:
script:
- sed -i 's|nextflow_config\x3A \x27biohpc.config\x27|nextflow_config\x3A \x27biohpc_docker.config\x27|' astrocyte_pkg.yml
- echo "Run astrocyte using dockerhub/docker.io registry pulls"
- astrocyte_cli run "$CI_PROJECT_DIR" --option=bg
- astrocyte_cli run "$CI_PROJECT_DIR" --option=q
- test -s "$CI_PROJECT_DIR/workflow/output/mobydick.txt.uppercase.tolines.wordcount"
cache_docker_image:
......@@ -104,7 +104,7 @@ singularity_astrocyte_test:
# Note the biohpc_singularity.config replacement.
- sed -i 's|nextflow_config\x3A \x27biohpc.config\x27|nextflow_config\x3A \x27biohpc_singularity.config\x27|' astrocyte_pkg.yml
- echo "Run astrocyte using singularity with dockerhub/docker.io registry pulls"
- astrocyte_cli run "$CI_PROJECT_DIR" --option=bg
- astrocyte_cli run "$CI_PROJECT_DIR" --option=q
- test -s "$CI_PROJECT_DIR/workflow/output/mobydick.txt.uppercase.tolines.wordcount"
cache_singularity_image:
......
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