Commit 1c8d7409 authored by Devin OKelly's avatar Devin OKelly
Browse files

Updated gitlabCI to handle new default singularity/astrocyte test

parent 3df49e15
Pipeline #10475 passed with stages
in 1 minute and 29 seconds
......@@ -133,8 +133,6 @@ cache_docker_image:
singularity_astrocyte_test:
stage: test_singularity
script:
# Note the biohpc_singularity.config replacement.
- sed -i 's|nextflow_config\x3A \x27biohpc.config\x27|nextflow_config\x3A \x27biohpc_singularity.config\x27|' astrocyte_pkg.yml
- astrocyte_cli run "$CI_PROJECT_DIR" --option=q
- test -s "$CI_PROJECT_DIR/workflow/output/mobydick.txt.uppercase.tolines.wordcount"
......
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