Commit 199723ff authored by Devin OKelly's avatar Devin OKelly
Browse files

Add background processing for the Nextflow stages, as they otherwise stall with SIGTTOU

parent acf301a1
...@@ -54,7 +54,7 @@ nextflow_test_docker: ...@@ -54,7 +54,7 @@ nextflow_test_docker:
- module load nextflow/20.01.0 - module load nextflow/20.01.0
- module load singularity/3.5.3 - module load singularity/3.5.3
- cd $CI_PROJECT_DIR/workflow - cd $CI_PROJECT_DIR/workflow
- nextflow -C $CI_PROJECT_DIR/workflow/configs/biohpc_docker.config run main.nf -with-trace -with-timeline -resume --verbose - nextflow -C $CI_PROJECT_DIR/workflow/configs/biohpc_docker.config run main.nf -with-trace -with-timeline -resume --verbose -bq
artifacts: artifacts:
paths: paths:
- $CI_PROJECT_DIR/workflow/.nextflow.log - $CI_PROJECT_DIR/workflow/.nextflow.log
...@@ -66,7 +66,7 @@ nextflow_test_singularity: ...@@ -66,7 +66,7 @@ nextflow_test_singularity:
- module load nextflow/20.01.0 - module load nextflow/20.01.0
- module load singularity/3.5.3 - module load singularity/3.5.3
- cd $CI_PROJECT_DIR/workflow - cd $CI_PROJECT_DIR/workflow
- nextflow -C $CI_PROJECT_DIR/workflow/configs/biohpc_singularity.config run main.nf -with-trace -with-timeline -resume --verbose - nextflow -C $CI_PROJECT_DIR/workflow/configs/biohpc_singularity.config run main.nf -with-trace -with-timeline -resume --verbose -bq
artifacts: artifacts:
paths: paths:
- $CI_PROJECT_DIR/workflow/.nextflow.log - $CI_PROJECT_DIR/workflow/.nextflow.log
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment