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BioHPC
astrocyte_example_wordcount
Commits
199723ff
Commit
199723ff
authored
Jun 08, 2021
by
Devin OKelly
Browse files
Add background processing for the Nextflow stages, as they otherwise stall with SIGTTOU
parent
acf301a1
Changes
1
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.gitlab-ci.yml
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199723ff
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@@ -54,7 +54,7 @@ nextflow_test_docker:
-
module load nextflow/20.01.0
-
module load singularity/3.5.3
-
cd $CI_PROJECT_DIR/workflow
-
nextflow -C $CI_PROJECT_DIR/workflow/configs/biohpc_docker.config run main.nf -with-trace -with-timeline -resume --verbose
-
nextflow -C $CI_PROJECT_DIR/workflow/configs/biohpc_docker.config run main.nf -with-trace -with-timeline -resume --verbose
-bq
artifacts
:
paths
:
-
$CI_PROJECT_DIR/workflow/.nextflow.log
...
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@@ -66,7 +66,7 @@ nextflow_test_singularity:
-
module load nextflow/20.01.0
-
module load singularity/3.5.3
-
cd $CI_PROJECT_DIR/workflow
-
nextflow -C $CI_PROJECT_DIR/workflow/configs/biohpc_singularity.config run main.nf -with-trace -with-timeline -resume --verbose
-
nextflow -C $CI_PROJECT_DIR/workflow/configs/biohpc_singularity.config run main.nf -with-trace -with-timeline -resume --verbose
-bq
artifacts
:
paths
:
-
$CI_PROJECT_DIR/workflow/.nextflow.log
...
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