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Commit 199723ff authored by Devin OKelly's avatar Devin OKelly
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Add background processing for the Nextflow stages, as they otherwise stall with SIGTTOU

parent acf301a1
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.gitlab-ci.yml
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......@@ -54,7 +54,7 @@ nextflow_test_docker:
- module load nextflow/20.01.0
- module load singularity/3.5.3
- cd $CI_PROJECT_DIR/workflow
- nextflow -C $CI_PROJECT_DIR/workflow/configs/biohpc_docker.config run main.nf -with-trace -with-timeline -resume --verbose
- nextflow -C $CI_PROJECT_DIR/workflow/configs/biohpc_docker.config run main.nf -with-trace -with-timeline -resume --verbose -bq
artifacts:
paths:
- $CI_PROJECT_DIR/workflow/.nextflow.log
......@@ -66,7 +66,7 @@ nextflow_test_singularity:
- module load nextflow/20.01.0
- module load singularity/3.5.3
- cd $CI_PROJECT_DIR/workflow
- nextflow -C $CI_PROJECT_DIR/workflow/configs/biohpc_singularity.config run main.nf -with-trace -with-timeline -resume --verbose
- nextflow -C $CI_PROJECT_DIR/workflow/configs/biohpc_singularity.config run main.nf -with-trace -with-timeline -resume --verbose -bq
artifacts:
paths:
- $CI_PROJECT_DIR/workflow/.nextflow.log
......
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