Commit 0cb47c84 authored by Devin OKelly's avatar Devin OKelly
Browse files

Update .gitlab-ci.yml file

parent 89b79a90
......@@ -94,7 +94,7 @@ docker_astrocyte_test:
script:
- sed -i "s|nextflow_config\x3A \x27biohpc.config\x27|nextflow_config\x3A \x27${config_filename}\x27|" astrocyte_pkg.yml
- echo "Run astrocyte using dockerhub/docker.io registry pulls"
- nextflow -C ./configs/biohpc_docker.config config -flat | grep -oP "process\.'[\w:]+'\.container = '\K([\w:]+)(?=')" | uniq >> containers.txt
- nextflow -C workflow/configs/biohpc_docker.config config -flat | grep -oP "process\.'[\w:]+'\.container = '\K([\w:]+)(?=')" | uniq >> containers.txt
- echo "BUILD_VERSION=hello" >> build.env
- astrocyte_cli run "$CI_PROJECT_DIR" --option=q
- test -s "$CI_PROJECT_DIR/workflow/output/mobydick.txt.uppercase.tolines.wordcount"
......
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