Commit fe67a524 authored by Peng Lian's avatar Peng Lian
Browse files

Update yml for Astrocyte 0.4.1

parent dd441567
Pipeline #10684 failed with stages
......@@ -9,7 +9,7 @@
# A unique identifier for the workflow package, text/underscores only
name: 'astrocyte_example'
# Who wrote this?
author: 'David Trudgian'
author: 'David Trudgian, Peng Lian'
# A contact email address for questions
email: 'biohpc-help@utsouthwestern.edu'
# A more informative title for the workflow package
......@@ -18,7 +18,23 @@ title: 'Astrocyte Example ChIPSeq Workflow'
description: |
This is an example workflow package for the BioHPC astrocyte workflow system.
It implements a simple ChIPSeq analysis workflow using BWA and MACS, plus a
simple R Shiny visualization application.
simple R Shiny visualization application. Please note that start from publish
version 0.0.8 and test version 0.0.1, this workflow will only support
Astrocyte 0.4.1 and above.
# The minimum Astrocyte version that requires to run this workflow. For old pipelines, which do not have this label
# a default value of 0.3.1 will be assigned automatically. A request of minimum version less than 0.4.0 will be ignored.
minimum_astrocyte_version: '0.4.1'
# The Nextflow version that requires to run this workflow. For old pipelines, which do not have this label
# a default value of 0.31.0 will be assigned automatically. Please make sure the requested nextflow version is available
# in the module list.
nextflow_version: '21.04.1'
# (Optional) The Nextflow config file to use for this workflow. If provided, the file should exist in workflow/configs
nextflow_config: 'biohpc.config'
# The container to use for this workflow, none/singularity. If omitted, the default value 'none' will be used.
container: 'none'
# The version of singularity to use. This is required if container == 'singularity'
singularity_version: '3.5.3'
# -----------------------------------------------------------------------------
# DOCUMENTATION
......@@ -45,6 +61,12 @@ workflow_modules:
- 'picard/1.127'
- 'macs/1.4.2'
# A list of container images requires to run this workflow.
# Specify full path and version names to ensure reproducability.
# This keyword is required when 'container' is specified in Astrocyte 0.4.1 and above
workflow_containers:
-
# A list of parameters used by the workflow, defining how to present them,
# options etc in the web interface. For each parameter:
#
......
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