Skip to content
GitLab
Menu
Projects
Groups
Snippets
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Sign in / Register
Toggle navigation
Menu
Open sidebar
BioHPC
astrocyte_example_chipseq
Commits
fe67a524
Commit
fe67a524
authored
Aug 09, 2021
by
Peng Lian
Browse files
Update yml for Astrocyte 0.4.1
parent
dd441567
Pipeline
#10684
failed with stages
Changes
1
Pipelines
1
Hide whitespace changes
Inline
Side-by-side
astrocyte_pkg.yml
View file @
fe67a524
...
...
@@ -9,7 +9,7 @@
# A unique identifier for the workflow package, text/underscores only
name
:
'
astrocyte_example'
# Who wrote this?
author
:
'
David
Trudgian'
author
:
'
David
Trudgian
,
Peng
Lian
'
# A contact email address for questions
email
:
'
biohpc-help@utsouthwestern.edu'
# A more informative title for the workflow package
...
...
@@ -18,7 +18,23 @@ title: 'Astrocyte Example ChIPSeq Workflow'
description
:
|
This is an example workflow package for the BioHPC astrocyte workflow system.
It implements a simple ChIPSeq analysis workflow using BWA and MACS, plus a
simple R Shiny visualization application.
simple R Shiny visualization application. Please note that start from publish
version 0.0.8 and test version 0.0.1, this workflow will only support
Astrocyte 0.4.1 and above.
# The minimum Astrocyte version that requires to run this workflow. For old pipelines, which do not have this label
# a default value of 0.3.1 will be assigned automatically. A request of minimum version less than 0.4.0 will be ignored.
minimum_astrocyte_version
:
'
0.4.1'
# The Nextflow version that requires to run this workflow. For old pipelines, which do not have this label
# a default value of 0.31.0 will be assigned automatically. Please make sure the requested nextflow version is available
# in the module list.
nextflow_version
:
'
21.04.1'
# (Optional) The Nextflow config file to use for this workflow. If provided, the file should exist in workflow/configs
nextflow_config
:
'
biohpc.config'
# The container to use for this workflow, none/singularity. If omitted, the default value 'none' will be used.
container
:
'
none'
# The version of singularity to use. This is required if container == 'singularity'
singularity_version
:
'
3.5.3'
# -----------------------------------------------------------------------------
# DOCUMENTATION
...
...
@@ -45,6 +61,12 @@ workflow_modules:
-
'
picard/1.127'
-
'
macs/1.4.2'
# A list of container images requires to run this workflow.
# Specify full path and version names to ensure reproducability.
# This keyword is required when 'container' is specified in Astrocyte 0.4.1 and above
workflow_containers
:
-
# A list of parameters used by the workflow, defining how to present them,
# options etc in the web interface. For each parameter:
#
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment