Skip to content
GitLab
Projects
Groups
Snippets
Help
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Sign in
Toggle navigation
A
astrocyte_example_chipseq
Project overview
Project overview
Details
Activity
Releases
Repository
Repository
Files
Commits
Branches
Tags
Contributors
Graph
Compare
Locked Files
Issues
0
Issues
0
List
Boards
Labels
Service Desk
Milestones
Iterations
Merge Requests
0
Merge Requests
0
Requirements
Requirements
List
CI / CD
CI / CD
Pipelines
Jobs
Schedules
Test Cases
Security & Compliance
Security & Compliance
Dependency List
License Compliance
Operations
Operations
Incidents
Environments
Analytics
Analytics
CI / CD
Code Review
Insights
Issue
Repository
Value Stream
Wiki
Wiki
Members
Members
Collapse sidebar
Close sidebar
Activity
Graph
Create a new issue
Jobs
Commits
Issue Boards
Open sidebar
BioHPC
astrocyte_example_chipseq
Commits
82caaca4
Commit
82caaca4
authored
May 15, 2016
by
David Trudgian
Browse files
Options
Browse Files
Download
Email Patches
Plain Diff
Move glob back to web
parent
396c0c8d
Changes
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
with
2 additions
and
3 deletions
+2
-3
workflow/main.nf
workflow/main.nf
+2
-3
No files found.
workflow/main.nf
View file @
82caaca4
...
...
@@ -17,9 +17,8 @@ params.fastq = "$baseDir/../test_data/*.fastq"
params.index = "/project/apps_database/iGenomes/Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/genome.fa"
// First, get the list of fastqs. When multiple files are selected on the web
// interface they will be passed as a comma-separated list. Therefore we use the
// { pattern1,pattern2 } glob syntax to pick all them up.
fastqs = Channel.fromPath( "{" + params.fastq+ ", }" )
// a glob pattern will be passed in
fastqs = Channel.fromPath( params.fastq )
// Now find the path to the BWA index directory
index_path = file(params.index).parent
// And get the name of the actual index inside that directory
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment