Skip to content
GitLab
Menu
Projects
Groups
Snippets
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Sign in / Register
Toggle navigation
Menu
Open sidebar
BioHPC
astrocyte_example_chipseq
Commits
82caaca4
Commit
82caaca4
authored
May 15, 2016
by
David Trudgian
Browse files
Move glob back to web
parent
396c0c8d
Changes
1
Hide whitespace changes
Inline
Side-by-side
workflow/main.nf
View file @
82caaca4
...
...
@@ -17,9 +17,8 @@ params.fastq = "$baseDir/../test_data/*.fastq"
params.index = "/project/apps_database/iGenomes/Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/genome.fa"
// First, get the list of fastqs. When multiple files are selected on the web
// interface they will be passed as a comma-separated list. Therefore we use the
// { pattern1,pattern2 } glob syntax to pick all them up.
fastqs = Channel.fromPath( "{" + params.fastq+ ", }" )
// a glob pattern will be passed in
fastqs = Channel.fromPath( params.fastq )
// Now find the path to the BWA index directory
index_path = file(params.index).parent
// And get the name of the actual index inside that directory
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment