From 3cea552710e38b8799b1fff4afd8096ff6a4b916 Mon Sep 17 00:00:00 2001
From: John Lafin <john.lafin@utsouthwestern.edu>
Date: Thu, 18 Jan 2024 09:32:04 -0600
Subject: [PATCH] Update nextflow version to 23.04.3
---
astrocyte_pkg.yml | 2 +-
workflow/configs/biohpc.config | 8 ++++++++
2 files changed, 9 insertions(+), 1 deletion(-)
diff --git a/astrocyte_pkg.yml b/astrocyte_pkg.yml
index 61d70e6..d594f55 100755
--- a/astrocyte_pkg.yml
+++ b/astrocyte_pkg.yml
@@ -37,7 +37,7 @@ minimum_astrocyte_version: '2.0.0'
# The Nextflow version that requires to run this workflow. For old pipelines, which do not have this label
# a default value of 0.31.0 will be assigned automatically. Please make sure the requested nextflow version is available
# in the module list.
-nextflow_version: '22.04.5'
+nextflow_version: '23.04.3'
# (Optional) The Nextflow config file to use for this workflow. If provided, the file should exist in workflow/configs
nextflow_config: 'biohpc.config'
# The container to use for this workflow, none/singularity. If omitted, the default value 'none' will be used.
diff --git a/workflow/configs/biohpc.config b/workflow/configs/biohpc.config
index dcbbd17..552c35d 100755
--- a/workflow/configs/biohpc.config
+++ b/workflow/configs/biohpc.config
@@ -4,3 +4,11 @@ process {
queue = '256GB,256GBv1,128GB'
time = '8h'
}
+
+// Overwrite execution report files
+// Required for nextflow version >22.10.0
+
+trace.overwrite = true
+dag.overwrite = true
+timeline.overwrite = true
+report.overwrite = true
\ No newline at end of file
--
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