diff --git a/docs/index.md b/docs/index.md index c09e6c5481b24a184b061f25b4a2ec595294489a..421c80108ca09912c4297bf3cef4503740225395 100644 --- a/docs/index.md +++ b/docs/index.md @@ -3,11 +3,11 @@   -This is the Astrocyte version of the NFCore ATACseq workflow. It is based on version 2.1.2 of the [nf-core/atacseq workflow](https://nf-co.re/atacseq/2.1.2/). More detailed information can be found on their [page](https://nf-co.re/atacseq/2.1.2/) and their [github repository](https://github.com/nf-core/atacseq/tree/2.1.2). +This Astrocyte adaptation of the NFCore ATACseq workflow is based on version 2.1.2 of [nf-core/atacseq workflow](https://nf-co.re/atacseq/2.1.2/). Detailed documentation is available on their [official page](https://nf-co.re/atacseq/2.1.2/) and [github repository](https://github.com/nf-core/atacseq/tree/2.1.2). ## The input file / the design file -Store the fastq.gz files in test_data folder or include the entire path as shown in the sample information table. +Store fastq.gz files in the test_data folder or specify full paths as demonstrated in the sample information table. # Project Data @@ -25,7 +25,7 @@ Store the fastq.gz files in test_data folder or include the entire path as shown -## Pipeline summary +## Pipeline Summary 1. Raw read QC ([`FastQC`](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/))