diff --git a/.gitmodules b/.gitmodules
index 2e5e0c7d337bff5dd1e102d95b8414bc5cec8751..e14e746002ae3b299c25df0c33c5656eac224981 100644
--- a/.gitmodules
+++ b/.gitmodules
@@ -1,9 +1,3 @@
-[submodule "workflow/external_repo/NFCore_ATACseq_runner"]
-	path = workflow/external_repo/NFCore_ATACseq_runner
-    url = git@git.biohpc.swmed.edu:s224730/nfcore_atacseq_runner.git
-[submodule "workflow/external_repo/atac_runner"]
-	path = workflow/external_repo/atac_runner
-	url = git@git.biohpc.swmed.edu:s224730/nfcore_atacseq_runner.git
 [submodule "workflow/external_repo/nfcore_atacseq_runner"]
-	path = workflow/external_repo/nfcore_atacseq_runner
-	url = git@git.biohpc.swmed.edu:s224730/nfcore_atacseq_runner.git
+    path = workflow/external_repo/nfcore_atacseq_runner
+    url = git@git.biohpc.swmed.edu:astrocyte/workflows/lee-lab/nfcore_atacseq_runner.git