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publish_1.0.0

c0810296 · Publish · May 28, 2026

Initial release of Astrocyte AlphaGenome Workflow v1.0.0

Integrates Google DeepMind AlphaGenome API for variant effect prediction
on the BioHPC Astrocyte platform.

Features:
- Batch variant scoring across all genomic modalities (RNA-seq, ATAC-seq,
  ChIP-seq, splicing, and more)
- REF vs ALT RNA-seq track comparison plots
- Interactive vizapp for browsing results
- Supports human (hg38) and mouse (mm10)
- Optional tissue/cell type filtering via ontology terms

For non-commercial research use only (CC-BY-NC 4.0).

test_1.1.5

4cfb0137 · Change copy to symlink · May 28, 2026
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Change copy to symlink
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test_1.1.4

bed77dca · Fixing vizapp cannot find output files · May 28, 2026
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Fixing
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test_1.1.3

5003870d · Fixing vizapp cannot find output files · May 28, 2026
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Fixing
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test_1.1.2

e622034b · Fixing vizapp cannot find output files · May 28, 2026
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Fixing main.nf for output dir
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test_1.1.1

d2f74f71 · Fixing · May 28, 2026
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Fixing run_scoring.py script
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test_1.1.0

87161cb4 · Fixing · May 28, 2026

Fixing vizapp no output issue.
def ontology_arg = (params.ontology_terms && params.ontology_terms != 'Null' && params.ontology_terms != 'true') ? "--ontology_terms \"${params.ontology_terms}\"" : ""

test_1.0.1

7dd81fd6 · Finalize · May 27, 2026
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Finish documents
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test_1.0.0

20843874 · Fully tested · May 26, 2026
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Fully tested from Nucleus system
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