From ffbb85b030aec04cf5944b8315e8570be37155c5 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Mon, 13 Aug 2018 16:03:29 -0500
Subject: [PATCH] Fix diffBind output.
---
workflow/main.nf | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index 666f8d5..67b4bd1 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -406,7 +406,8 @@ process peakAnnotation {
}
// Define channel to find number of unique experiments
-noUniqueExperiments = 2
+noUniqueExperiments = uniqueExperiments
+ .readLines().size()
// Calculate Differential Binding Activity
process diffPeaks {
@@ -431,6 +432,7 @@ process diffPeaks {
"""
touch design_diffpeak_annotatePeaks.tsv
touch no_diffbind.bed
+ touch no_diffbind.csv
touch heatmap.pdf
touch pca.pdf
touch normcount_peaksets.txt
--
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