From fac677c3db3270abfaf1636a7cf4cdddbf6c490b Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Fri, 11 Jan 2019 13:07:54 -0600
Subject: [PATCH] Fix trim reads input.
---
workflow/scripts/trim_reads.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/scripts/trim_reads.py b/workflow/scripts/trim_reads.py
index 75e0b8c..34a40eb 100644
--- a/workflow/scripts/trim_reads.py
+++ b/workflow/scripts/trim_reads.py
@@ -124,7 +124,7 @@ def main():
check_tools()
# Rename fastq files by sample
- fastq_rename = rename_reads(fastq, sample paired)
+ fastq_rename = rename_reads(fastq, sample, paired)
# Run trim_reads
trim_reads(fastq_rename, paired)
--
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