From fa258f2231fe8ff9808a2401d15abfd419c3bbca Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Sat, 28 Mar 2020 13:11:05 -0500
Subject: [PATCH] remove work directory.

---
 .gitlab-ci.yml | 18 ++++++------------
 1 file changed, 6 insertions(+), 12 deletions(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 304fbdf..e6e91bb 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -41,8 +41,7 @@ single_end_mouse:
   - nextflow run workflow/main.nf --astrocyte true
   - pytest -m singleend
   after_script:
-    when: on_success
-      - rm -rf work/
+    - rm -rf work/
 
 paired_end_human:
   stage: single
@@ -54,8 +53,7 @@ paired_end_human:
   - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true --astrocyte false
   - pytest -m pairedend
   after_script:
-    when: on_success
-      - rm -rf work/
+    - rm -rf work/
 
 single_end_single_control:
   stage: single
@@ -67,8 +65,7 @@ single_end_single_control:
   - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_single_contol_SE.txt" --genome 'GRCh38' --pairedEnd false --astrocyte false
   - pytest -m singlecontrol
   after_script:
-    when: on_success
-      - rm -rf work/
+    - rm -rf work/
 
 single_end_diff:
   stage: multiple
@@ -81,8 +78,7 @@ single_end_diff:
   - pytest -m singleend
   - pytest -m singlediff
   after_script:
-    when: on_success
-      - rm -rf work/
+    - rm -rf work/
 
 paired_end_diff:
   only:
@@ -93,8 +89,7 @@ paired_end_diff:
   - pytest -m pairedend
   - pytest -m paireddiff
   after_script:
-    when: on_success
-      - rm -rf work/
+    - rm -rf work/
 
 single_end_skip:
   stage: skip
@@ -104,8 +99,7 @@ single_end_skip:
   - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --skipDiff true --skipMotif true --skipPlotProfile true --astrocyte false
   - pytest -m singleskip_true
   after_script:
-    when: on_success
-      - rm -rf work/
+    - rm -rf work/
 
 
 cleanup_job:
-- 
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