diff --git a/workflow/scripts/pool_and_psuedoreplicate.py b/workflow/scripts/pool_and_psuedoreplicate.py index 700070724499f2ab0a9625645853123cfb6ecf4c..ec626b2697d8bb426a5678ac3547e47e1e0a7dc4 100644 --- a/workflow/scripts/pool_and_psuedoreplicate.py +++ b/workflow/scripts/pool_and_psuedoreplicate.py @@ -40,6 +40,7 @@ def get_args(): parser.add_argument('-c', '--cutoff', help="Cutoff ratio used for choosing controls.", + type=int, default=1.2) args = parser.parse_args() @@ -247,7 +248,7 @@ def main(): path_to_pool_control = cwd + '/' + pool_control if control_df.values.max() > 1.2: logger.info("Number of reads in controls differ by " + - " > factor of %f. Using pooled controls." % (str(cutoff_ratio))) + " > factor of %f. Using pooled controls." % (cutoff_ratio)) design_new_df['control_tag_align'] = path_to_pool_control else: for index, row in design_new_df.iterrows():