diff --git a/workflow/scripts/runChipseeker.R b/workflow/scripts/runChipseeker.R index e238a4aa4d7af33c9455abded45e0d4fb9c1e10c..b20df7833b2ee7bcd65dec1908712f941bf8479a 100644 --- a/workflow/scripts/runChipseeker.R +++ b/workflow/scripts/runChipseeker.R @@ -18,8 +18,8 @@ txdb <- TxDb.Hsapiens.UCSC.hg19.knownGene } if(genome=="GRCm38") { -library(TxDb.Hsapiens.UCSC.mm10.knownGene) -txdb <- TxDb.Hsapiens.UCSC.mm10.knownGene +library(TxDb.Mmusculus.UCSC.mm10.knownGene) +txdb <- TxDb.Mmusculus.UCSC.mm10.knownGene } if(genome=="GRCh38") { diff --git a/workflow/scripts/runMemechip.py b/workflow/scripts/runMemechip.py index 36f84c512e79c1f6381bc2066954a849c4fc6b0d..b1f848f0376a449329594d1fe3c67b3b0e454c84 100644 --- a/workflow/scripts/runMemechip.py +++ b/workflow/scripts/runMemechip.py @@ -29,7 +29,7 @@ def prepare_argparser(): argparser.add_argument("-l","--limit",dest = "limit",type=int,default=-1, help="Top limit of peaks") return(argparser) -def rc(): +def rc(seq): comps = {'A':"T",'C':"G",'G':"C",'T':"A","N":"N"} return ''.join([comps[x] for x in seq.upper()[::-1]])