From d9572f4c4160c8ccc1dd6bfd781ccbbf01c82d2e Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Sat, 7 Oct 2017 08:30:20 -0500
Subject: [PATCH] Add in nextflow test.

---
 .gitlab-ci.yml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 68ee9ce..acb133b 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -1,7 +1,10 @@
 before_script:
   - module add  python/3.6.1-2-anaconda
   - pip install --user pytest-pythonpath
+  - module load nextflow/0.24.1-SNAPSHOT
+  - ln -s /project/shared/bicf_workflow_ref/workflow_testdata/chipseq/*fastq.gz test_data/
 
 test:
   script:
+  - nextflow run workflow/main.nf
   - pytest
-- 
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