diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 68ee9ceb5ead4311861ab92c5224a2b7f7fdb651..acb133b5be9f6f5e79c352f6704633fbe716d907 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -1,7 +1,10 @@ before_script: - module add python/3.6.1-2-anaconda - pip install --user pytest-pythonpath + - module load nextflow/0.24.1-SNAPSHOT + - ln -s /project/shared/bicf_workflow_ref/workflow_testdata/chipseq/*fastq.gz test_data/ test: script: + - nextflow run workflow/main.nf - pytest