From d68be9e20f3c8f1943442c7b39bd292362d94182 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Fri, 11 Jan 2019 13:01:00 -0600
Subject: [PATCH] Change diffbind peaks.
---
workflow/tests/test_diff_peaks.py | 16 ++++++++++++----
1 file changed, 12 insertions(+), 4 deletions(-)
diff --git a/workflow/tests/test_diff_peaks.py b/workflow/tests/test_diff_peaks.py
index 1d48b61..3abd333 100644
--- a/workflow/tests/test_diff_peaks.py
+++ b/workflow/tests/test_diff_peaks.py
@@ -23,8 +23,12 @@ def test_diff_peaks_singleend_multiple_rep():
assert os.path.exists(os.path.join(test_output_path, 'heatmap.pdf'))
assert os.path.exists(os.path.join(test_output_path, 'pca.pdf'))
assert os.path.exists(os.path.join(test_output_path, 'normcount_peaksets.txt'))
- assert os.path.exists(os.path.join(test_output_path, 'ENCSR272GNQ_vs_ENCSR238SGC_diffbind.bed'))
- diffbind_file = test_output_path + 'ENCSR272GNQ_vs_ENCSR238SGC_diffbind.csv'
+ if os.path.isfile(os.path.join(test_output_path, 'ENCSR272GNQ_vs_ENCSR238SGC_diffbind.bed')):
+ assert os.path.exists(os.path.join(test_output_path, 'ENCSR272GNQ_vs_ENCSR238SGC_diffbind.bed'))
+ diffbind_file = test_output_path + 'ENCSR272GNQ_vs_ENCSR238SGC_diffbind.csv'
+ else os.path.isfile(os.path.join(test_output_path, 'ENCSR238SGC_vs_ENCSR272GNQ_diffbind.bed')):
+ assert os.path.exists(os.path.join(test_output_path, 'ENCSR238SGC_vs_ENCSR272GNQ_diffbind.bed'))
+ diffbind_file = test_output_path + 'ENCSR238SGC_vs_ENCSR272GNQ_diffbind.csv'
assert os.path.exists(diffbind_file)
assert utils.count_lines(diffbind_file) == 201039
@@ -33,7 +37,11 @@ def test_annotate_peaks_pairedend_single_rep():
assert os.path.exists(os.path.join(test_output_path, 'heatmap.pdf'))
assert os.path.exists(os.path.join(test_output_path, 'pca.pdf'))
assert os.path.exists(os.path.join(test_output_path, 'normcount_peaksets.txt'))
- assert os.path.exists(os.path.join(test_output_path, 'ENCSR757EMK_vs_ENCSR729LGA_diffbind.bed'))
- diffbind_file = test_output_path + 'ENCSR757EMK_vs_ENCSR729LGA_diffbind.csv'
+ if os.path.isfile(os.path.join(test_output_path, 'ENCSR757EMK_vs_ENCSR729LGA_diffbind.bed')):
+ assert os.path.exists(os.path.join(test_output_path, 'ENCSR757EMK_vs_ENCSR729LGA_diffbind.bed'))
+ diffbind_file = test_output_path + 'ENCSR757EMK_vs_ENCSR729LGA_diffbind.csv'
+ else os.path.isfile(os.path.join(test_output_path, 'ENCSR729LGA_vs_ENCSR757EMK_diffbind.bed')):
+ assert os.path.exists(os.path.join(test_output_path, 'ENCSR729LGA_vs_ENCSR757EMK_diffbind.bed'))
+ diffbind_file = test_output_path + 'ENCSR729LGA_vs_ENCSR757EMK_diffbind.csv'
assert os.path.exists(diffbind_file)
assert utils.count_lines(diffbind_file) == 66201
--
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