From d5243c8b7ab821446c8d94916518b8e3c2ca5593 Mon Sep 17 00:00:00 2001 From: Venkat Malladi <venkat.malladi@utsouthwestern.edu> Date: Fri, 10 Nov 2017 09:37:39 -0600 Subject: [PATCH] Fix single replicate assiging. --- workflow/scripts/pool_and_psuedoreplicate.py | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/workflow/scripts/pool_and_psuedoreplicate.py b/workflow/scripts/pool_and_psuedoreplicate.py index 2dae5f7..d125edc 100644 --- a/workflow/scripts/pool_and_psuedoreplicate.py +++ b/workflow/scripts/pool_and_psuedoreplicate.py @@ -189,12 +189,12 @@ def main(): experiment_id = design_df.at[0, 'experiment_id'] replicate = design_df.at[0, 'replicate'] design_new_df = design_df.loc[np.repeat(design_df.index, 4)].reset_index() - design_new_df.set_value(1, 'sample_id', experiment_id + '_pr') - design_new_df.set_value(1, 'replicate', '1_pr') - design_new_df.set_value(2, 'sample_id', experiment_id + '_pr') - design_new_df.set_value(2, 'replicate', '2_pr') - design_new_df.set_value(3, 'sample_id', experiment_id + '_pooled') - design_new_df.set_value(3, 'sample_id', experiment_id + '_pooled') + design_new_df.at[1, 'sample_id'] = experiment_id + '_pr' + design_new_df.at[1, 'replicate'] = '1_pr' + design_new_df.at[2, 'sample_id'] = experiment_id + '_pr' + design_new_df.at[2, 'replicate'] = '2_pr' + design_new_df.at[3, 'sample_id'] = experiment_id + '_pr' + design_new_df.at[3, 'replicate'] = '2_pr' # Make 2 self psuedoreplicates self_pseudoreplicates_dict = {} -- GitLab