From d0a6516b228b9f939f7f489c680e4c9e11f5882d Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Sat, 9 Mar 2019 22:15:05 -0600
Subject: [PATCH] Add in software versions.
---
workflow/scripts/software_report.py | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/workflow/scripts/software_report.py b/workflow/scripts/software_report.py
index 1b0a3b8..658ccee 100644
--- a/workflow/scripts/software_report.py
+++ b/workflow/scripts/software_report.py
@@ -18,7 +18,7 @@ regexes = {
'bedGraphToBigWig': ['version_bedGraphToBigWig.txt', r"bedGraphToBigWig v (\S+)"],
'ChIPseeker': ['version_ChIPseeker.txt', r"Version (\S+)\""],
'MEME-ChIP': ['version_memechip.txt', r"Version (\S+)"],
- 'DiffBind': ['version_DiffBind.txt', r"Version (\S+)"],
+ 'DiffBind': ['version_DiffBind.txt', r"Version (\S+)\""],
'deepTools': ['version_deeptools.txt', r"deeptools (\S+)"],
}
@@ -52,8 +52,8 @@ for k, v in regexes.items():
# Dump to YAML
print(
'''
- id: 'BICF ChIP-seq Analaysis'
- section_name: 'BICF ChIP-seq Analaysis Software Versions'
+ id: 'BICF ChIP-seq Analysis'
+ section_name: 'Software Versions'
section_href: 'https://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/'
plot_type: 'html'
description: 'are collected at run time from the software output.'
--
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