From cecc9ac63cea86d448a3fbc4f7862593efa037f5 Mon Sep 17 00:00:00 2001
From: Jeremy Mathews <Jeremy.Mathews@utsouthwestern.edu>
Date: Thu, 25 Jul 2019 16:03:01 -0500
Subject: [PATCH] redo
---
workflow/scripts/pool_and_psuedoreplicate.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/workflow/scripts/pool_and_psuedoreplicate.py b/workflow/scripts/pool_and_psuedoreplicate.py
index f2e4ef7..a0a6a98 100644
--- a/workflow/scripts/pool_and_psuedoreplicate.py
+++ b/workflow/scripts/pool_and_psuedoreplicate.py
@@ -209,7 +209,7 @@ def generate_design(paired, cutoff_ratio, design_df, cwd, no_reps, no_unique_con
# Duplicate rows and update for pool and psuedoreplicates and update tagAlign with single end data
experiment_id = design_df.at[0, 'experiment_id']
replicate = design_df.at[0, 'replicate']
- design_new_df = design_df #.loc[np.repeat(design_df.index, 4)].reset_index()
+ design_new_df = design_df.loc[np.repeat(design_df.index, 4)].reset_index()
pool_experiment = design_df.tag_align.unique()
# Update tagAlign with single end data
@@ -233,7 +233,7 @@ def generate_design(paired, cutoff_ratio, design_df, cwd, no_reps, no_unique_con
pool_pseudoreplicates_dict = {}
for rep, tag_file in zip(design_df['replicate'], design_df['tag_align']):
replicate_prefix = experiment_id + '_' + str(rep)
- pool_pseudoreplicates_dict = \
+ pool_pseudoreplicates_dict[rep] = \
self_psuedoreplication(tag_file, replicate_prefix, paired)
# Update design to include new self pseudo replicates
--
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