From c8ff87a79f485e21506b11266e7b730bc220878a Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Tue, 12 Mar 2019 08:43:04 -0500
Subject: [PATCH] Fix sytnax of processes.
---
workflow/main.nf | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index 8630929..00b0633 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -496,15 +496,16 @@ process softwareReport {
experimentQCVersions
references
-
output:
file('*_mqc.yaml') into softwareVersions
file('*_mqc.txt') into softwareReferences
script:
+
"""
python3 $baseDir/scripts/generate_versions.py -o software_versions
python3 $baseDir/scripts/generate_references.py -r $references -o software_references
"""
+
}
--
GitLab