diff --git a/workflow/main.nf b/workflow/main.nf index 86309294c03a7d27e14bbbb357d722c3c15ac61f..00b0633e67caf7de1c65d68d8adec5c9e5f4a445 100644 --- a/workflow/main.nf +++ b/workflow/main.nf @@ -496,15 +496,16 @@ process softwareReport { experimentQCVersions references - output: file('*_mqc.yaml') into softwareVersions file('*_mqc.txt') into softwareReferences script: + """ python3 $baseDir/scripts/generate_versions.py -o software_versions python3 $baseDir/scripts/generate_references.py -r $references -o software_references """ + }