From c86c2e79c8ad3b7c3dc20bb40636238aaa877e8f Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Fri, 17 Apr 2020 08:06:21 -0500
Subject: [PATCH] Only get the pooled files.
---
workflow/main.nf | 2 +-
workflow/scripts/plot_profile.sh | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index ea6f756..5a49790 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -483,7 +483,7 @@ process plotProfile {
input:
- file ("*.pooled.fc_signal.bw") from bigwigs.collect()
+ file bigWigList from bigwigs.collect()
output:
diff --git a/workflow/scripts/plot_profile.sh b/workflow/scripts/plot_profile.sh
index 277f993..34bf24e 100755
--- a/workflow/scripts/plot_profile.sh
+++ b/workflow/scripts/plot_profile.sh
@@ -84,7 +84,7 @@ run_main() {
usage
fi
- bws=$(ls *.bw)
+ bws=$(ls *.pooled.fc_signal.bw)
check_tools || exit 1
--
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