From c61254800ee5dfcd39d2aa96bd51cbb09cda4bdc Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Fri, 19 Apr 2019 12:29:48 -0500
Subject: [PATCH] Add astrocyte false for running.
---
.gitlab-ci.yml | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index ea095f0..282e1f4 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -32,7 +32,7 @@ single_end_mouse:
only:
- master
script:
- - nextflow run workflow/main.nf -resume
+ - nextflow run workflow/main.nf --astrocyte 'false' -resume
- pytest -m singleend
artifacts:
expire_in: 2 days
@@ -44,7 +44,7 @@ paired_end_human:
except:
- master
script:
- - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true -resume
+ - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true --astrocyte 'false' -resume
- pytest -m pairedend
artifacts:
expire_in: 2 days
@@ -56,7 +56,7 @@ single_end_diff:
except:
- master
script:
- - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' -resume
+ - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --astrocyte 'false' -resume
- pytest -m singlediff
artifacts:
expire_in: 2 days
@@ -66,7 +66,7 @@ paired_end_diff:
- master
stage: multiple
script:
- - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_PE.txt" --genome 'GRCh38' --pairedEnd true -resume
+ - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_PE.txt" --genome 'GRCh38' --pairedEnd true --astrocyte 'false' -resume
- pytest -m paireddiff
artifacts:
expire_in: 2 days
@@ -76,7 +76,7 @@ single_end_skip:
only:
- master
script:
- - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --skipDiff true --skipMotif true -resume
+ - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --skipDiff true --skipMotif true --astrocyte 'false' -resume
- pytest -m singleskip_true
artifacts:
expire_in: 2 days
--
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