diff --git a/env.md b/env.md new file mode 100644 index 0000000000000000000000000000000000000000..54176d86aa83a2fd8cf7825ad2fee7643c6234d3 --- /dev/null +++ b/env.md @@ -0,0 +1,17 @@ +## Create new env in specific folder +```shell +conda create -p /project/shared/bicf_workflow_ref/chipseq_bchen4/ -c r r-essentials +#Add channels +conda config --add channels conda-forge +conda config --add channels r +conda config --add channels bioconda +pip install --user twobitreader +conda install -c r r-xml +``` + +Install bioconductor in R console: +```R +source("http://bioconductor.org/biocLite.R") +biocLite() +biocLite(c("DiffBind","ChIPseeker")) +``` \ No newline at end of file