From bf27b99b97c1f8ba2f2c2a9731a53538a45cfda0 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Sun, 29 Oct 2017 17:01:41 -0500
Subject: [PATCH] Fix index as string references.
---
workflow/scripts/pool_and_psuedoreplicate.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/workflow/scripts/pool_and_psuedoreplicate.py b/workflow/scripts/pool_and_psuedoreplicate.py
index f2a0c2c..7b5d636 100644
--- a/workflow/scripts/pool_and_psuedoreplicate.py
+++ b/workflow/scripts/pool_and_psuedoreplicate.py
@@ -124,7 +124,7 @@ def self_psuedoreplication(tag_file, prefix, paired):
# Convert read pairs to reads into standard tagAlign file
- for i, index in enumerate([0, 1]):
+ for i, string(index) in enumerate([0, 1]):
steps = ['cat %s' % (splits_prefix + index)]
if paired:
steps.extend([r"""awk 'BEGIN{OFS="\t"}{printf "%s\t%s\t%s\tN\t1000\t%s\n%s\t%s\t%s\tN\t1000\t%s\n",$1,$2,$3,$9,$4,$5,$6,$10}'"""])
@@ -226,7 +226,7 @@ def main():
pool_pseudoreplicates_dict = {}
for index, row in pseudoreplicates_df.iterrows():
replicate_id = index + 1
- pr_filename = experiment_id + ".pr" + replicate_id + '.bedse.gz'
+ pr_filename = experiment_id + ".pr" + str(replicate_id) + '.bedse.gz'
pool_replicate = pool(row, pr_filename, False)
pool_pseudoreplicates_dict[replicate_id] = pool_replicate
--
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