From bb9b42c8a07d6f7d1303a0b6c38f4915543afdce Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Fri, 11 Jan 2019 21:33:00 -0600
Subject: [PATCH] Fix variable name.
---
workflow/scripts/trim_reads.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/scripts/trim_reads.py b/workflow/scripts/trim_reads.py
index ebd1f8f..e31ec93 100644
--- a/workflow/scripts/trim_reads.py
+++ b/workflow/scripts/trim_reads.py
@@ -89,7 +89,7 @@ def rename_reads(fastq, sample, paired):
# Great symbolic links
os.symlink(fastq[0], renamed_fastq[0])
- return fastq_rename
+ return renamed_fastq
def trim_reads(fastq, paired):
--
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