diff --git a/workflow/scripts/trim_reads.py b/workflow/scripts/trim_reads.py index faac9212aade64180325bf20343d60988baf1ce6..29d9b92c45b4903e7aabcec18fd2f2d57736958f 100644 --- a/workflow/scripts/trim_reads.py +++ b/workflow/scripts/trim_reads.py @@ -45,14 +45,14 @@ def check_tools(): trimgalore_path = shutil.which("trim_galore") if trimgalore_path: - logger.info('Found trimgalore: %s', fastqc_path) + logger.info('Found trimgalore: %s', trimgalore_path) else: logger.error('Missing trimgalore') raise Exception('Missing trimgalore') cutadapt_path = shutil.which("cutadapt") if cutadapt_path: - logger.info('Found cutadapt: %s', fastqc_path) + logger.info('Found cutadapt: %s', cutadapt_path) else: logger.error('Missing cutadapt') raise Exception('Missing cutadapt')